Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.3  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.6  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 250 LKDIASAFQSESVWTSLSGRSFGGALRGFSLYTVIDCGLI 131
           L+D A AF  +    ++ G S GG+     L + +  GL+
Sbjct: 233 LRDNAEAFGGDPELITIFGESAGGSSVSLHLISPVTRGLV 272


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 250 LKDIASAFQSESVWTSLSGRSFGGALRGFSLYTVIDCGLI 131
           L+D A AF  +    ++ G S GG+     L + +  GL+
Sbjct: 233 LRDNAEAFGGDPELITIFGESAGGSSVSLHLISPVTRGLV 272


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 175  EHHRSCVHLKTSTRFPI 225
            EHH   ++LKT T++ +
Sbjct: 1039 EHHLQIMNLKTYTQYSV 1055


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 373 GHHYAGSGPLSDFSFCVFRFFARL 302
           GHHY  +G   D  +  F  + R+
Sbjct: 63  GHHYGAAGSQQDMPYPRFPPYNRM 86


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 322 FRFFARLLNNPR 287
           F  FAR L NPR
Sbjct: 182 FSLFARFLKNPR 193


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 236 SDIFQFVHRPKQILGTDPRIVQQPCEKPKDTEREIAQRTRPRIVM 370
           S++ +   RPK       ++VQ     P   ER +   T+PR ++
Sbjct: 357 SELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMV 401


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 236 SDIFQFVHRPKQILGTDPRIVQQPCEKPKDTEREIAQRTRPRIVM 370
           S++ +   RPK       ++VQ     P   ER +   T+PR ++
Sbjct: 272 SELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMV 316


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 236 SDIFQFVHRPKQILGTDPRIVQQPCEKPKDTEREIAQRTRPRIVM 370
           S++ +   RPK       ++VQ     P   ER +   T+PR ++
Sbjct: 591 SELAKAKERPKLRKDMYEKMVQVDPTAPNAEERRVQGVTKPRYMV 635


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +2

Query: 530 CSFGENCNLHTYL 568
           C +G NC +  Y+
Sbjct: 223 CKYGNNCEIDMYM 235


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 5/13 (38%), Positives = 8/13 (61%)
 Frame = +2

Query: 530 CSFGENCNLHTYL 568
           C +G NC +  Y+
Sbjct: 20  CKYGNNCEIDMYM 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,292
Number of Sequences: 438
Number of extensions: 4239
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)