Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0514
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    29   3.3  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   4.3  
At3g59170.1 68416.m06597 F-box family protein contains F-box dom...    27   7.5  
At3g10800.1 68416.m01300 bZIP transcription factor family protei...    27   7.5  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    27   7.5  
At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /...    27   10.0 

>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 82   CSSITAQQTVLTIEMAKLGHNQLLCTTKNHGEHHRSCVHLKTSTRF 219
            C S++ +   LT +   +G+N        HGE + SC + K S  F
Sbjct: 1085 CGSLSHESRKLTSDHVFMGYNSCFLVKNVHGESN-SCCYTKASFEF 1129


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
           contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 422 LCNDMYTSDTSKGLREAVTSYF--SVRLLYLITSCCQPCSFGENCNLHTYLLSG 577
           +C  +Y+ D S   RE    Y   S   L  ++S C  C+F E C L + L  G
Sbjct: 33  MCMGVYSDDVSISAREVAQDYSCDSCGDLATVSSAC--CNFDELCGLDSALEMG 84


>At3g59170.1 68416.m06597 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 473

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 380 VSMDDIXNPRAR--DILCNDMYTSDTSKGLREAVTSYFSVRLLYLITSCCQPCSFGEN 547
           +++D I   R R  ++ C     +D   GLR     Y S   L ++T CC+     EN
Sbjct: 299 MTVDQIREVRLRKNEVNCMVGNATDFIVGLRNVRVLYLSPETLEVLTYCCKQIPIFEN 356


>At3g10800.1 68416.m01300 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription
           factor; contains similarity to TGACG-sequence specific
           DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana
           tabacum]
          Length = 675

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -3

Query: 367 HYAGSGPLSDFSFC--VFRF 314
           H  GSGPL D+S C  VF+F
Sbjct: 521 HEGGSGPLMDYSMCTEVFQF 540


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/73 (26%), Positives = 35/73 (47%)
 Frame = -3

Query: 403 IXNVVHTDCRGHHYAGSGPLSDFSFCVFRFFARLLNNPRIGAQYLLRSMYKLKDIASAFQ 224
           + N+ H D RG+ + GS P  D++  + RF  R L    +        ++   + A++ +
Sbjct: 188 LTNLEHLDLRGNRFNGSIPTQDYN-SLRRF--RKLEILDLSDNLFNSRIFPFLNSATSLK 244

Query: 223 SESVWTSLSGRSF 185
           S S+W +  G  F
Sbjct: 245 SLSLWGNNMGGPF 257


>At4g32370.1 68417.m04609 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 342

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 125 ISIVSTVCCAVIEEHRFYSLIRHYFS*SYILVIVKL 18
           I+++      +I +H F +  +HYF  S++ VI KL
Sbjct: 307 ITLIDAGYPIIINQHYFDNKKKHYFDKSFLKVIFKL 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,346,658
Number of Sequences: 28952
Number of extensions: 270440
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)