Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0513
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.9  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 592 RKYPYGASPMLSPSACLYGPSSRHLWNMDSRCLQDGDQLVQQNYPQRE 449
           R++  GA P++S S C     S  LW   +  +    + V  N+ Q E
Sbjct: 67  RRHIKGAIPVVSLSTCSMLCGSTQLWPQPTGPVTLASRAVTFNHQQLE 114


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 369 KISSPERVCQRIFKCS 322
           K+  PE +C+R+F+ S
Sbjct: 233 KVFRPEPLCERLFEAS 248


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 92  LFNLFKMGSLSFYYNFSFKPLYYNY 18
           ++N +  G LS YY + F    Y Y
Sbjct: 265 VYNQWWSGPLSMYYQYPFGLPEYEY 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,177
Number of Sequences: 336
Number of extensions: 2890
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)