Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0513
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 83 4e-17
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.74
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 1.7
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.3
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.0
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.9
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 6.9
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.4
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 25 9.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.1
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 82.6 bits (195), Expect = 4e-17
Identities = 41/113 (36%), Positives = 65/113 (57%)
Frame = +1
Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYT 435
ED F + +LAALV SKVYY+LG ++++L +AL +G F + ++Y +T I K ID +
Sbjct: 60 EDHSFPERELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCIDMFI 119
Query: 436 QKRKALFVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFE 594
K L+ + A+ +D RL +V + + LG+A+E R+DI E
Sbjct: 120 HKSAELYKNPKADPLDERLSGVVEGIFQKCYAKNEWRHVLGIAIEAHRLDIIE 172
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 113 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWP 217
ITSA G+++LLDE E++ AL ++ +D+ WP
Sbjct: 12 ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWP 46
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 28.7 bits (61), Expect = 0.74
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 436 QKRKALFVDSSAELIDHRLEDIVNPCS--RGALKMDHTDKRL 555
Q RK L +DS E++D R + NP S AL+M++ D L
Sbjct: 221 QLRKNLLIDSGVEILDSRSKRKENPVSLEEIALEMNNLDDSL 262
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 238 LDRFRYFWPKLIDDVVQPLQSEFFNFRHGLIEQGNNPRGR 119
LD F + W K++DD+ + + E + R + PRG+
Sbjct: 1195 LDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKPRGK 1234
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 352 LGAGDLFDVNARNEYVDTTIAKAIDFYTQK 441
+G G D +A+ YVDT A++ TQ+
Sbjct: 280 IGCGRYHDAHAKQHYVDTAHCYAMELETQR 309
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 113 CSFFFVILFNLFKMGSLSFYYNFSFK 36
C FF+ LF+ F S ++NF F+
Sbjct: 109 CFFFYFSLFSFFSFLFTSLHFNFFFR 134
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 6.9
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 42 RKVVIKR----QRTHFK*VK*NNEEK*TSRLPRGLFPCSMSPCLK 164
+KV+IKR + H V NN+EK T L +F M PC K
Sbjct: 109 QKVLIKRPEGCRELHSCNVLMNNDEKNTLSLTPSIFLSVMKPCPK 153
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 583 PYGASPMLSPSACLYGPSSRHLWNMDSRCLQDGDQLVQQNYPQR 452
PY SP+ +PS L SS +LW + L L+Q P+R
Sbjct: 234 PY-TSPLRTPSRTLSRSSSHYLWVRHGK-LTRSVSLLQHKTPRR 275
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 589 KYPYGASPMLSPSACLYGPSSRHL 518
K+PY P + S LY P+ R L
Sbjct: 454 KFPYQYFPYMKFSVSLYEPALRFL 477
Score = 20.6 bits (41), Expect(2) = 7.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Frame = -1
Query: 541 YGPSSRHLWNMDSRCLQDGDQLVQQN 464
Y PSS H++ ++S +++ N
Sbjct: 503 YSPSSEHIFEIESSLRLSSNKVFYHN 528
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 426 VDRFCDRSVDIFVSRVHVEKISSPERVC 343
V C R DI + +++ ISSP +C
Sbjct: 24 VVELCQRVRDILIEESNIQWISSPVTIC 51
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 466 SAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFEESIMXSD 615
+ E+ ++ EDIV+ + A ++D+T ++ LET + E++I S+
Sbjct: 339 AVEIANNVKEDIVSTANDDANELDNTSEK--ATLETSSKPVTEQAIEQSE 386
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 319 NDSTLYWLLMRLADAGRKFCLRQDFYFLDRF 227
N+S + L M ++++ KFCL + F RF
Sbjct: 2172 NESDVCLLGMSISESSGKFCLTKSVTFTPRF 2202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,457
Number of Sequences: 5004
Number of extensions: 51230
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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