Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0513
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...   100   8e-22
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347...    65   4e-11
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564...    29   3.1  
04_04_1559 - 34428286-34429062                                         27   9.4  

>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score =  100 bits (240), Expect = 8e-22
 Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
 Frame = +1

Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYT 435
           ED+ F Q QLAALV SKV+Y+LG  +DSL+YALGAG LFD +  ++Y  T +AKA+D Y 
Sbjct: 56  EDEEFDQRQLAALVVSKVFYYLGELDDSLSYALGAGPLFDPSEGSDYAQTLLAKALDEYA 115

Query: 436 QKR-KAL-FVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFEESIMX 609
             R K+L       E +D RLE IV       +      + +G++LE +R+D  EE+I  
Sbjct: 116 SIRSKSLKAAGEGDEKMDPRLEAIVERMLDKCILDGKYQQAMGMSLECKRLDKLEEAISR 175

Query: 610 SDDIPGML 633
           SD++ G L
Sbjct: 176 SDNLNGSL 183



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 15/35 (42%), Positives = 27/35 (77%)
 Frame = +2

Query: 113 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWP 217
           ++SA+G++++L EP +E+K  AL  L+++V  FWP
Sbjct: 8   VSSASGLLAMLQEPAAELKLHALANLNSLVHVFWP 42


>04_04_1094 -
           30832987-30833316,30833530-30834273,30834484-30834742,
           30834821-30835041,30835127-30835375,30835460-30835595,
           30835864-30836207,30836589-30836758,30837080-30837185,
           30837267-30837330,30838462-30838616
          Length = 925

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
 Frame = +1

Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYT 435
           ED+ F Q QLAALV SKV+Y+LG   D+L+YALGAG LFD++  ++Y    +   +    
Sbjct: 57  EDEDFEQRQLAALVVSKVFYYLGELNDALSYALGAGPLFDISEDSDYAHALL--GVFLTV 114

Query: 436 QKRKALFVDSSAELIDHRLEDIVNPCS--RGAL 528
           Q ++A+ +      +D +LE  +  C    GAL
Sbjct: 115 QYQQAMGMGVECRRLD-KLESAIVRCDNIHGAL 146



 Score = 36.3 bits (80), Expect = 0.020
 Identities = 15/35 (42%), Positives = 26/35 (74%)
 Frame = +2

Query: 113 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWP 217
           ++SA+GI+++L EP  E+K  AL  L+++V  F+P
Sbjct: 9   VSSASGILAMLQEPAEELKLHALASLNSVVHLFYP 43


>04_04_1096 +
           30855192-30855225,30856135-30856208,30856293-30856467,
           30856842-30856918,30857042-30857279,30857414-30857478,
           30857628-30858086,30858253-30858465,30858613-30859002
          Length = 574

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 385 RNEYVDTTIAKAIDFYTQKRKALFVDSSAELIDHRLEDIVNP 510
           +N  V+TTI +  DFY Q+ KA+      +   H   ++  P
Sbjct: 459 KNHEVETTILEDFDFYEQREKAMLDIRQRQKQQHTDSEVQKP 500


>04_04_1559 - 34428286-34429062
          Length = 258

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/78 (26%), Positives = 29/78 (37%)
 Frame = -1

Query: 583 PYGASPMLSPSACLYGPSSRHLWNMDSRCLQDGDQLVQQNYPQREPFSFECKSRSLLRS* 404
           P G + +  PS+    P  R    +    L DGD         R  + F   S +L+   
Sbjct: 11  PLGCALLGPPSSASLNPPLRPAGQLAGSPLSDGDGTSGDRGSSRAMYIFLALSAALVMET 70

Query: 403 CRHIRFSRSRRKDLQPRA 350
            R IR     R  L+P A
Sbjct: 71  MRRIRSHHGHRHLLKPIA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,818
Number of Sequences: 37544
Number of extensions: 314257
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)