Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0513
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16987| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   4e-26
SB_10198| Best HMM Match : MBT (HMM E-Value=0)                         30   1.4  
SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_8927| Best HMM Match : UCH (HMM E-Value=0)                          28   5.5  
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             28   7.3  

>SB_16987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score =  115 bits (276), Expect = 4e-26
 Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYT 435
           ED+ F   QL+ALVASKVYYHLGAFEDSLTYALGAGDLFDVN  +EYV+TTIAK ID YT
Sbjct: 53  EDESFKHRQLSALVASKVYYHLGAFEDSLTYALGAGDLFDVNGHSEYVETTIAKCIDHYT 112

Query: 436 QKRKALFVDSSAEL-IDHRLEDIVN 507
            +R+    +S  ++ ID RLE IVN
Sbjct: 113 MQRQKQADNSDEKINIDARLEAIVN 137



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = +2

Query: 104 KMNITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFW 214
           KM++TSAAGI++LLDE  S++K FAL +L++IVD+FW
Sbjct: 2   KMSLTSAAGILALLDESESDLKVFALSKLNSIVDDFW 38


>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
          Length = 753

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
 Frame = -1

Query: 451 EPFSFECKSRSLLRS*CRHIRFSRSR--RKDLQPRARMSKNLQMLLNDSTLYWLLMRLAD 278
           E +  +C+++S+ +S  +H++ + +   R+ ++  A+  K+      +S  YW+   +  
Sbjct: 46  EDYLKKCRAKSVPKSAFKHVKENPTSGFRRGMKVEAKDYKS------NSGTYWVATIIMV 99

Query: 277 AGRKFCLRQDFYFLDRFRYFWPKLIDDVVQPL 182
           +G    LR D Y  DR   FW       VQP+
Sbjct: 100 SGPLLLLRFDGYGNDRSEDFWCDASTPDVQPI 131


>SB_21722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 394 YVDTTIAKAIDFYTQKRKALFVDSSA---ELIDHRLEDIVNPC 513
           YVD T    +D Y+  +  L V+  A    L+D  L + +NPC
Sbjct: 129 YVDCTCLTRVDLYSDAKVVLVVEKEATYHRLLDDGLLEKLNPC 171


>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1432

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 595  PRKYPYGASPMLSPSACLYGPS 530
            PRKYP GA P+  P+  L  P+
Sbjct: 1214 PRKYPKGAMPLTGPACALEQPA 1235


>SB_8927| Best HMM Match : UCH (HMM E-Value=0)
          Length = 316

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 522 TSGTWIHDVFKTVIN*FSRTIHKESLSLLSVKVDRFCDRSVDI 394
           T  TW+H++F+  +   +R +  ES   +S K + F D SVD+
Sbjct: 200 TETTWVHEMFEGTLTNETRCLCCES---VSSKDESFLDLSVDV 239


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 541 YGPSSRHLWNMDSRCLQDGDQLVQQ 467
           YGP+++  W  D R L+DG  +V+Q
Sbjct: 98  YGPATQVRWLQDPRDLKDGQLVVKQ 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,398,152
Number of Sequences: 59808
Number of extensions: 368145
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)