Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0513
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regu... 38 0.006
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 38 0.006
Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 28 4.9
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 28 4.9
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 27 8.5
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 27 8.5
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 27 8.5
>U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform a
protein.
Length = 668
Score = 37.9 bits (84), Expect = 0.006
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Frame = +1
Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIA 414
++ F +H AAL+ SKVY+ L +E +L +AL GD V A EYV+ I
Sbjct: 67 DNNTFPEHSSAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIE 125
Query: 415 KAIDFYTQKRKALFVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFE 594
AID Y K L S I +L D+++ L + L ET + + +
Sbjct: 126 TAIDTY----KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMID 179
Query: 595 ESI 603
+I
Sbjct: 180 RAI 182
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 37.9 bits (84), Expect = 0.006
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Frame = +1
Query: 256 EDKIFSQHQLAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIA 414
++ F +H AAL+ SKVY+ L +E +L +AL GD V A EYV+ I
Sbjct: 67 DNNTFPEHSSAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIE 125
Query: 415 KAIDFYTQKRKALFVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFE 594
AID Y K L S I +L D+++ L + L ET + + +
Sbjct: 126 TAIDTY----KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMID 179
Query: 595 ESI 603
+I
Sbjct: 180 RAI 182
>Z19158-4|CAJ76964.1| 719|Caenorhabditis elegans Hypothetical
protein T23G5.2a protein.
Length = 719
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 544 LYGPSSRHLWNMDSRCLQDGDQLVQQNYPQ 455
L G S RHLW +CL ++V+ NYP+
Sbjct: 398 LDGLSMRHLWRPGVQCLLKIIEIVEANYPE 427
>Z75527-8|CAA99778.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.6 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 131 SPRQT*CSFFFVILFNLF 78
+PR+T CS FF I+F+LF
Sbjct: 224 APRETICSLFFYIIFDLF 241
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 513 TWIHDVFKTVIN*FSRTIHKESLSLLSVKVDRFCDRSVDI 394
TWIH++F+ ++ +R + S +S K + F D S+D+
Sbjct: 183 TWIHEIFQGILTNETRCL---SCETVSSKDEDFLDLSIDV 219
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 513 TWIHDVFKTVIN*FSRTIHKESLSLLSVKVDRFCDRSVDI 394
TWIH++F+ ++ +R + S +S K + F D S+D+
Sbjct: 195 TWIHEIFQGILTNETRCL---SCETVSSKDEDFLDLSIDV 231
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 101 RKMNITSAAGIISLLDEPMSEVKEFALKR 187
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 101 RKMNITSAAGIISLLDEPMSEVKEFALKR 187
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 101 RKMNITSAAGIISLLDEPMSEVKEFALKR 187
R N+ + S LDEP E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,087
Number of Sequences: 27780
Number of extensions: 280791
Number of successful extensions: 833
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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