Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0513
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32730.1 68415.m04005 26S proteasome regulatory subunit, puta...   105   3e-23
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...   104   6e-23
At4g29800.1 68417.m04243 patatin-related low similarity to patat...    29   2.6  
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p...    27   7.9  

>At2g32730.1 68415.m04005 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1004

 Score =  105 bits (251), Expect = 3e-23
 Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
 Frame = +1

Query: 256 EDKIFSQHQ--LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDF 429
           ED+ F  HQ  LAAL+ SKV+Y+LG   DSL+YALGAG LFDV+  ++YV T +AKAID 
Sbjct: 54  EDEEFDLHQRQLAALLVSKVFYYLGELNDSLSYALGAGPLFDVSEDSDYVHTLLAKAIDE 113

Query: 430 YTQKRKALFVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFEESIMX 609
           Y   R      +    ID RLE IV       +      + +G+A+E RR+D  EE+I+ 
Sbjct: 114 YASLRSKAVESNEMVDIDPRLEAIVERMLGKCISDGKYQQAMGIAIECRRLDKLEEAIIK 173

Query: 610 SDDIPGML 633
           SD++ G L
Sbjct: 174 SDNVQGTL 181



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 27/35 (77%)
 Frame = +2

Query: 113 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWP 217
           ++SA G++++L+EP   +K  AL  L+N+VD+FWP
Sbjct: 6   VSSAGGLLAMLNEPHPVLKLHALSNLNNLVDQFWP 40


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score =  104 bits (249), Expect = 6e-23
 Identities = 57/128 (44%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
 Frame = +1

Query: 256 EDKIFSQHQ--LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDF 429
           ED+ F QHQ  LAAL+ASKV+Y+LG   DSL+YALGAG LFDV+  ++Y+ T ++KAID 
Sbjct: 54  EDEEFDQHQRQLAALLASKVFYYLGELNDSLSYALGAGSLFDVSEDSDYIHTLLSKAIDE 113

Query: 430 YTQKRKALFVDSSAELIDHRLEDIVNPCSRGALKMDHTDKRLGLALETRRMDIFEESIMX 609
           Y   R      S    ID RL  IV       +      + +G+A+E RR+D  EE+I+ 
Sbjct: 114 YAILRSKAVESSEVVEIDPRLVAIVERMLDKCITDGKYQQAMGIAIECRRLDKLEEAIIK 173

Query: 610 SDDIPGML 633
           S+++ G L
Sbjct: 174 SENVQGTL 181



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/35 (42%), Positives = 25/35 (71%)
 Frame = +2

Query: 113 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWP 217
           ++SA G++++L+EP   +K  AL  L  +VD+FWP
Sbjct: 6   VSSAGGLLAMLNEPHPSLKLHALSYLIRLVDQFWP 40


>At4g29800.1 68417.m04243 patatin-related low similarity to patatin
           precursor [Solanum brevidens][GI:563125]; contains
           Patatin domain PF01743
          Length = 525

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 331 EDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDSSAELIDHRLEDIVNP 510
           ED L  +LG G LF+VN   E V     K    + +    +  D SAE +D  +     P
Sbjct: 355 EDLLVLSLGTGQLFEVNYDYEQVKNWRVKE---WARPMARISGDGSAEFVDQAVAMGFGP 411

Query: 511 C-SRGALKMDHTDKRLG 558
             S   +++     RLG
Sbjct: 412 YRSSNYVRIQANGSRLG 428


>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF01480: PWI domain, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 899

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 333 RFFDIRARGWRSFRREREKRICRHYDRKSDRLLHSKEK 446
           R +  R R W   RREREK   R Y+++ ++    K K
Sbjct: 475 RAYQTRLRQWE--RREREKEKERQYEKEKEKEKERKRK 510


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,615
Number of Sequences: 28952
Number of extensions: 261548
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)