Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0512
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   126   6e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    71   6e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    60   6e-11
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    57   6e-10
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   8.5  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  126 bits (305), Expect = 6e-31
 Identities = 55/84 (65%), Positives = 66/84 (78%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA+GG+  
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
               LVDLEPGTM +V+SG FG +
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNL 84


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 70.5 bits (165), Expect = 6e-14
 Identities = 30/83 (36%), Positives = 51/83 (61%)
 Frame = +3

Query: 69  REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVRA 248
           REI+ +QAGQCGNQIG++FW+ +  EHGI P G     +   ++R +V++ ++   +   
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 249 PRXLVDLEPGTMXSVRSGPFGQI 317
              L+DLEP  + ++ S  +G +
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSL 85


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 60.5 bits (140), Expect = 6e-11
 Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLE--RINVYYNEASGGQ 239
           MREI+ I  GQ G QIG   WE+   EHGI P G  +  +  Q      + +++E   G+
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 240 VRAPRXLVDLEPGTMXSVRSGPF 308
                  VDLEP  +  VR+GP+
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPY 83


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 57.2 bits (132), Expect = 6e-10
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
 Frame = +3

Query: 66  MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASG---- 233
           MRE++ +  GQ G QIG   WE+   EHGI P G      + ++ + N Y N+  G    
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG--FPTENSEVHKNNSYLNDGFGTFFS 58

Query: 234 --GQVR-APRXL-VDLEPGTMXSVRSGPF 308
             GQ +  PR + VDLEP  +  VR+GP+
Sbjct: 59  ETGQGKFVPRSIYVDLEPNVIDQVRTGPY 87


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 157 SMPCSSEMISQNLAPIWLPH*PAWICTISLILFYLC 50
           S+   SE+ S N+  + +   P  IC+ SL  F LC
Sbjct: 683 SLAKMSEIRSLNVQTVSVKGFPRRICSNSLFYFVLC 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,237
Number of Sequences: 5004
Number of extensions: 17837
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)