Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0512
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 140 2e-34
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 138 7e-34
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 136 2e-33
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 135 5e-33
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 135 5e-33
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 135 7e-33
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 134 1e-32
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 132 4e-32
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 131 9e-32
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 62 6e-11
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 8e-11
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 62 8e-11
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 60 4e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 60 4e-10
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 57 2e-09
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 57 2e-09
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 56 7e-09
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 56 7e-09
At4g37190.1 68417.m05265 expressed protein 31 0.22
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 2.1
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 2.7
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ... 27 3.6
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 27 3.6
At4g29690.1 68417.m04229 type I phosphodiesterase/nucleotide pyr... 26 6.3
At1g68390.1 68414.m07813 expressed protein contains Pfam profile... 26 6.3
At3g13050.1 68416.m01626 transporter-related low similarity to a... 25 8.3
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 25 8.3
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 140 bits (338), Expect = 2e-34
Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXS-DXQLERINVYYNEASGGQV 242
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+G S D QLERINVYYNEASGG+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 243 RAPRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM S+RSGP+GQI
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQI 85
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 138 bits (334), Expect = 7e-34
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G SD QLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM SVR+GP+GQI
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQI 84
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 136 bits (330), Expect = 2e-33
Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHG-XSDXQLERINVYYNEASGGQV 242
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y G +D QLERINVYYNEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 243 RAPRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM S+RSGPFGQI
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQI 85
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 135 bits (327), Expect = 5e-33
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y G SD QLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQ 314
L+DLEPGTM S+RSGP+GQ
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQ 83
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 135 bits (327), Expect = 5e-33
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y G SD QLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQ 314
L+DLEPGTM S+RSGP+GQ
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQ 83
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 135 bits (326), Expect = 7e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y G S QLERI+VY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM S+RSGPFGQI
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQI 84
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 134 bits (324), Expect = 1e-32
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G +D QLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM SVRSGP+GQI
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQI 84
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 132 bits (320), Expect = 4e-32
Identities = 61/84 (72%), Positives = 68/84 (80%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG G +D QLERINVY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM S+RSGPFGQI
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQI 84
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 131 bits (317), Expect = 9e-32
Identities = 59/84 (70%), Positives = 69/84 (82%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y G S+ QLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 246 APRXLVDLEPGTMXSVRSGPFGQI 317
L+DLEPGTM SVRSGP+GQI
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQI 84
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 6e-11
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G S + N +++E S GQ
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 240 VRAPRXL-VDLEPGTMXSVRSGPFGQI 317
PR + +DLEP + VR+G + Q+
Sbjct: 61 -HVPRAVFLDLEPTVIDEVRTGTYRQL 86
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +3
Query: 69 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVRA 248
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 249 PRXLVDLEPGTMXSVRSGPF 308
L+DLEP + +++G +
Sbjct: 63 RALLIDLEPRVINGIQNGEY 82
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 62.1 bits (144), Expect = 8e-11
Identities = 28/80 (35%), Positives = 45/80 (56%)
Frame = +3
Query: 69 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVRA 248
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 249 PRXLVDLEPGTMXSVRSGPF 308
L+DLEP + +++G +
Sbjct: 63 RALLIDLEPRVINGIQNGDY 82
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 59.7 bits (138), Expect = 4e-10
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 240 VRAPRXL-VDLEPGTMXSVRSGPFGQI 317
PR + VDLEP + VR+G + Q+
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 59.7 bits (138), Expect = 4e-10
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 240 VRAPRXL-VDLEPGTMXSVRSGPFGQI 317
PR + VDLEP + VR+G + Q+
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXS--DXQLERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G G + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRXL-VDLEPGTMXSVRSGPFGQI 317
PR + VDLEP + VR+G + Q+
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXS--DXQLERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G G + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRXL-VDLEPGTMXSVRSGPFGQI 317
PR + VDLEP + VR+G + Q+
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 55.6 bits (128), Expect = 7e-09
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQL----ERINVYYNEASG 233
MRE + I GQ G Q+G WE+ EHGI P G SD + + N +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGA 58
Query: 234 GQVRAPRXL-VDLEPGTMXSVRSGPFGQI 317
G+ PR + VDLEP + VR+G + Q+
Sbjct: 59 GK-HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 55.6 bits (128), Expect = 7e-09
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGXSDXQL----ERINVYYNEASG 233
MRE + I GQ G Q+G WE+ EHGI P G SD + + N +++E
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--PSDKTVGGGDDAFNTFFSETGA 58
Query: 234 GQVRAPRXL-VDLEPGTMXSVRSGPFGQI 317
G+ PR + VDLEP + VR+G + Q+
Sbjct: 59 GK-HVPRAVFVDLEPTVIDEVRTGTYRQL 86
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.22
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 155
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 72 EIVHIQAGQCGNQIGAKFWEIISD 143
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 87 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 179
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
(SP:Q92797) {Homo sapiens}
Length = 1091
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 166 PVGSMPCSSEMISQNLAPIW 107
PVG C SE ++Q L +W
Sbjct: 655 PVGKEVCDSERVTQGLGAVW 674
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/78 (29%), Positives = 32/78 (41%)
Frame = -3
Query: 248 GTYLPAGGFIVVYIDALQLXVRXPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFP 69
G + AGGF + I + + + P G VL+GD DL A L + FP
Sbjct: 132 GFHKAAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFP 190
Query: 68 HFVLFM*TINYLTLKIXP 15
+L + TL I P
Sbjct: 191 DGILINGRGSGATLNIEP 208
>At4g29690.1 68417.m04229 type I phosphodiesterase/nucleotide
pyrophosphatase family protein similar to SP|P22413
Ectonucleotide pyrophosphatase/phosphodiesterase 1
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
Pfam profile PF01663: Type I phosphodiesterase /
nucleotide pyrophosphatase
Length = 457
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 151 PCSSEMISQNLAPIWLPH*PAWICTIS 71
P S E+ ++NL P W P W+ ++
Sbjct: 126 PVSGELFNRNLNPKWWLGEPLWVTAVN 152
>At1g68390.1 68414.m07813 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function,
DUF266; expression supported by MPSS
Length = 408
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 80 TYPSWSMRQPDRS*VLGDHLRRARHRPHRCLPWGL*LXVGAHQCIL 217
+YPS++ P+ D + R RH P + + WG V A Q +L
Sbjct: 172 SYPSYNQSDPE------DSVFRGRHIPSKRVDWGYVNMVEAEQRLL 211
>At3g13050.1 68416.m01626 transporter-related low similarity to
apical organic cation transporter [Sus scrofa]
GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2)
{Rattus norvegicus}; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 500
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 102 GNQIGAKFWEIISDEHG 152
G IGA W I+SD+HG
Sbjct: 72 GMLIGAYSWGIVSDKHG 88
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/56 (23%), Positives = 22/56 (39%)
Frame = +3
Query: 126 WEIISDEHGIDPTGAYHGXSDXQLERINVYYNEASGGQVRAPRXLVDLEPGTMXSV 293
+E+ E D T + LER YY + Q + + DL+ M ++
Sbjct: 345 YEVAKQEGQYDETERRREMAKNSLERYTHYYERWASNQTSRQKAMADLQQAQMQNL 400
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,360,695
Number of Sequences: 28952
Number of extensions: 104565
Number of successful extensions: 275
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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