Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0511
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   1.3  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   2.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.9  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    26   3.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   5.1  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   6.8  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 566 GIS-LTVFETFLPLSPVGLLLNNYQTNREGFAKLFRKLSDDSWEKTI 429
           GIS +  F+TFL  + + L+   Y   R GF K F  +    W+  I
Sbjct: 167 GISNIPAFQTFLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYII 213


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 333 DRPRDRSPGQSLGHAEAACREDFLHPREVTKNSDL-LHDAE--ITQYIEEEFVSQQADTI 163
           D+  D SPG     +E+   E F +P+E++K       D E  ++ Y  +E + +    I
Sbjct: 624 DKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYAPKESIQETGYAI 683

Query: 162 RSLAGHTSDXKRFITE 115
            S    T+  +  I +
Sbjct: 684 NSGENFTTAARHAILD 699


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 181 THEFLLDVLSDLSIVEEVAVFSDFPWMKKILS 276
           TH+ + D+ + L   +E   FS FP  KK++S
Sbjct: 619 THKDIFDLQNILRYCDERGDFSSFPSFKKLIS 650


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 402 GWEDGLLESHHTERRQGQQLHRRDR 328
           GWED  L+   T  R+   +HRR R
Sbjct: 61  GWEDQTLDQVETLVRKENHVHRRSR 85


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 213 ITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNG 106
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 622 CSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSASYSTTT 497
           C  Y    K + V +N+L+ L S+     Y Y +S   S TT
Sbjct: 81  CMPYTIIRKVSRVKSNDLEQLLSVSTSNGYEYRISLQVSETT 122


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/74 (22%), Positives = 28/74 (37%)
 Frame = +1

Query: 115 LGYEPLXVRXVTREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSDFPWMKKILSASCFCV 294
           LGY+P+  R  +  AT             V++  S            W   I  A C C+
Sbjct: 51  LGYKPVFKREFSTWATFSFAFSISGLFATVVTTYSYPLISGGAPSAVWCWLIAGAGCMCI 110

Query: 295 SKALARAPISWPIS 336
           + ++A    ++P S
Sbjct: 111 ALSVAELVSAYPTS 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,745
Number of Sequences: 5004
Number of extensions: 45661
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)