Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0511
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg (sp...    33   0.17 
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot...    31   0.67 
U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body prot...    31   0.67 
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele...    31   0.67 
U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    28   4.8  
U70845-4|AAB09102.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC024791-6|AAF60660.2|  782|Caenorhabditis elegans Human spg
           (spastic paraplegia)protein 7 protein.
          Length = 782

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 255 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGKD 100
           + V K  ++LH     Q  EE F +Q   TIR  A   +D K+F  +    D
Sbjct: 41  KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92


>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
           1, isoform a protein.
          Length = 1010

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 315 SPGQSLGHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
           +P    GHAEA    +F+  R   + ++++   ++T Y E+E+ +     +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267


>U40802-1|AAM81106.1|  999|Caenorhabditis elegans Dense body protein
           1, isoform c protein.
          Length = 999

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 315 SPGQSLGHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
           +P    GHAEA    +F+  R   + ++++   ++T Y E+E+ +     +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267


>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
           C.elegans vinculin (deb-1) gene, complete cds. ).
          Length = 1010

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 315 SPGQSLGHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
           +P    GHAEA    +F+  R   + ++++   ++T Y E+E+ +     +R
Sbjct: 216 TPHPRQGHAEAIANRNFMSQRMTEEMNEIIRVLQLTTYDEDEWDADNVTVMR 267


>U13070-1|AAK67224.1|  730|Caenorhabditis elegans Hypothetical
           protein F01F1.7 protein.
          Length = 730

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
 Frame = -2

Query: 366 ERRQGQQLHRRDRPRDRSPGQSLGHAEAACREDFLHPREVTKNSDLLHDAEITQY---IE 196
           ER   +   RR R RDR  G+    + +  R D    R+  +N D  ++ ++++    ++
Sbjct: 101 ERSGSRDRRRRSRSRDRDGGRRRDRSRSRDRRDRNDDRKRDRNEDSDNEEDVSKMADAVK 160

Query: 195 EEFVSQQADTIRSLAGHTSDXKRFITE-NNGKDLS 94
           + ++ +Q +  +   G     K+F+ + + G+D S
Sbjct: 161 DRYLGKQKE--KKKRGRRLHEKKFVFDWDAGEDTS 193


>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -3

Query: 422 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEIGH---EIGALAKALDTQKQLAER 270
           ++H+    G ++ +S  TLK +   NY      + EI H   EI  L  +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 269 IFFIHGKSLKTATSSTMLRSLNTSRRN 189
           +  + G   K++  +    S  TS  N
Sbjct: 96  LIMMTGDD-KSSIHTVSSHSTTTSTTN 121


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
 Frame = -3

Query: 422 IKHVTKRGGKMDFSSHTTLKGDKGSNY------TVEIGH---EIGALAKALDTQKQLAER 270
           ++H+    G ++ +S  TLK +   NY      + EI H   EI  L  +L  QKQ+ E 
Sbjct: 36  LRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISHLEREIYQLTHSLIEQKQVIEN 95

Query: 269 IFFIHGKSLKTATSSTMLRSLNTSRRN 189
           +  + G   K++  +    S  TS  N
Sbjct: 96  LIMMTGDD-KSSIHTVSSHSTTTSTTN 121


>Z75550-4|CAA99923.2|  335|Caenorhabditis elegans Hypothetical
           protein T22C1.6 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = -3

Query: 518 GLLLNNYQTNREGFAKLFRKLSDD---SWEKTIGLIKHVTKRGGKMDFSSHTTLKGDKG- 351
           GL   N+QT  E  AK+ +KL  +   + E+    +K + K   +    S +  + +K  
Sbjct: 84  GLQKANHQTREEACAKM-KKLEVERGLAVEQLKVTLKDIEKTMAEGRSKSDSLAEDNKKL 142

Query: 350 SNYTVEIGHEIGALAKALDTQKQLAERIFFIHGKS 246
           S    EIGH+     K +D Q Q  E+ +  +GK+
Sbjct: 143 SEKFSEIGHQYEEKMKVIDQQIQKKEKYWEEYGKT 177


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
            F21G4.2 protein.
          Length = 1573

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 252  EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGK 103
            E T   D+  DA I + I EEF +    TI        D  R I  N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -3

Query: 557 LTVFETFLPLSPVGLLLNNYQTNREGFAKLFRKLSDDSWEKTI 429
           L VF     +  +   +NN ++  EG    F+ L+DD+W++ +
Sbjct: 14  LGVFSALCSIGHIVQDINNLRSEVEGRVDEFKVLADDTWDRLL 56


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
            protein F21G4.2 protein.
          Length = 1573

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 252  EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDXKRFITENNGK 103
            E T   D+  DA I + I EEF +    TI        D  R I  N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545


>U70845-4|AAB09102.1|  340|Caenorhabditis elegans Hypothetical
           protein F22H10.5 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 608 RPIQGQPRCSERTEGISLTVFETFLPLSPVGLLLNNYQTNREGFAKL 468
           R I    +C E T+GI   + E  +  S   L   N+    E F K+
Sbjct: 125 RDISNGEKCGEHTQGIDAVIAELAILKSLSALSTKNHANVTENFVKM 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,114,308
Number of Sequences: 27780
Number of extensions: 259717
Number of successful extensions: 851
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)