Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0511
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 148 TREATNRIGLLTHEFLLDVLSDLSIVEEVAVFSDFPWMKKI 270
           + E+ N  GL    FL +V+SD   + +   F D   +K I
Sbjct: 802 SEESINNQGLECLRFLNEVISDFDAILDQNKFKDIIKIKTI 842


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 399 WEDGLLESHHTERRQGQQLHRRDRPRD 319
           +ED   E  ++ R  G++   RDR R+
Sbjct: 234 YEDSRHEDRNSYRNDGERSCSRDRSRE 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,332
Number of Sequences: 438
Number of extensions: 3095
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)