Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0511
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02620.1 68418.m00198 ankyrin repeat family protein contains ...    31   0.83 
At4g34820.1 68417.m04941 expressed protein                             31   0.83 
At5g05240.1 68418.m00560 expressed protein similar to unknown pr...    29   2.5  
At4g10430.3 68417.m01715 expressed protein                             28   4.4  
At4g10430.2 68417.m01713 expressed protein                             28   4.4  
At4g10430.1 68417.m01714 expressed protein                             28   4.4  
At2g06200.1 68415.m00682 expressed protein                             28   4.4  
At1g33230.1 68414.m04106 expressed protein                             28   4.4  
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam...    28   5.8  
At2g31960.1 68415.m03905 glycosyl transferase family 48 protein ...    28   5.8  
At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing...    27   7.7  

>At5g02620.1 68418.m00198 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 524

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 333 DRPRDRSPGQSLGHAEAACREDFL 262
           D P+D  PG SLG A AA R +FL
Sbjct: 377 DDPKDVPPGYSLGEARAAPRPEFL 400


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 371 TLKGDKGSNYTVEIGHEIGALAKALDTQKQLAERIFFIHGKSLK 240
           T +G+K  + T  +G EIGAL + LD      +    I+G SLK
Sbjct: 233 TPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDSRLRINGVSLK 276


>At5g05240.1 68418.m00560 expressed protein similar to unknown
           protein (gb AAD32815.2)
          Length = 530

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = -2

Query: 339 RRDRPRDRSPGQSLGHAEAACREDFLHPREVTKNSDLLHDAEITQYIEEEFVSQQADTIR 160
           R     D SP ++LG A   CR +F    +     D+       +   ++  S++ +T+R
Sbjct: 276 RHSNSADGSPRKNLGDA---CRSEFYQVFQYALPKDMYSMRYYAEKCADDEFSEENNTVR 332

Query: 159 S---LAGHTSDXKRFITENNGKDLSLAVYL 79
           S   +AG  S+    ++  +  DL+ A  L
Sbjct: 333 SRFQVAGKFSENDSSLSSEDASDLNSASVL 362


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 626 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLL-NNYQTNR--EGFAKLFRKL 456
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LL N YQ  R     A    K 
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 255

Query: 455 SDDSWEKTIGL 423
            D  W +T G+
Sbjct: 256 MDVVWGETAGV 266


>At4g10430.2 68417.m01713 expressed protein
          Length = 271

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 626 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLL-NNYQTNR--EGFAKLFRKL 456
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LL N YQ  R     A    K 
Sbjct: 122 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 179

Query: 455 SDDSWEKTIGL 423
            D  W +T G+
Sbjct: 180 MDVVWGETAGV 190


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -3

Query: 626 ALQRVLRPIQGQPRCSERTEGISLTVFETFLPLSPVGLLL-NNYQTNR--EGFAKLFRKL 456
           AL  +   I+GQP C ++  G+ L  F  +  +  V +LL N YQ  R     A    K 
Sbjct: 198 ALVSLTWEIKGQPNCVQKQRGVHL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKR 255

Query: 455 SDDSWEKTIGL 423
            D  W +T G+
Sbjct: 256 MDVVWGETAGV 266


>At2g06200.1 68415.m00682 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 397 PPLLVTCFMRPMVFSHESSDNFLKSFANPSL 489
           PP L+    RP +FS  SS +   SF +P+L
Sbjct: 32  PPHLLFLIKRPFLFSSSSSSSSSSSFFSPTL 62


>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 602 IQGQPRCSERTEGISLTVFETFLPLSPVGLLL-NNYQTNR--EGFAKLFRKLSDDSWEKT 432
           I+GQP C ++ +G+ L  F  +  +  V +LL N YQ  R     A    K  D  W +T
Sbjct: 207 IKGQPNCVQKQKGVRL--FLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGET 264

Query: 431 IGL 423
            G+
Sbjct: 265 AGV 267


>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
           profile PF00628: PHD-finger
          Length = 696

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = -3

Query: 569 EGISLTVFETFLP-LSPVGLLLNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGK 393
           E +SL+  ++ L  +     +L     + +G      + SDDSWEK  G++  V   GG 
Sbjct: 605 EDVSLSREDSLLDEMLDASWILKKLGKDAKGKKVQIHEASDDSWEK--GVVSEVGGAGG- 661

Query: 392 MDFSSHTTLKGDKGSNYTVEIGHE 321
              +S   +  + G   TVE+G +
Sbjct: 662 ---TSKLMVTLENGKVKTVELGKQ 682


>At2g31960.1 68415.m03905 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase;
            contains non-consensus splice aite AC at exon 33
          Length = 1959

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 506  NNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRG 399
            N +  NR G      K  +  WEK IG ++H  KRG
Sbjct: 1730 NKWIYNRGGIGVPPEKSWESWWEKEIGHLRHSGKRG 1765


>At2g26660.1 68415.m03198 SPX (SYG1/Pho81/XPR1) domain-containing
           protein low similarity to NUC-2 [Neurospora crassa]
           GI:1399532, xenotropic and polytropic murine leukemia
           virus receptor [Mus musculus castaneus] GI:6093320;
           contains Pfam profile PF03105: SPX domain
          Length = 287

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 458 LSDDSWEKTIGLIKHVTK 405
           L DDSW+K +G+++ V K
Sbjct: 270 LEDDSWKKKVGVLEQVAK 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,686,041
Number of Sequences: 28952
Number of extensions: 255406
Number of successful extensions: 817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)