Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0503
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                33   0.23 
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)                   31   0.71 
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)                  28   5.0  
SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)         28   5.0  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   6.6  
SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06)          27   8.7  
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)                 27   8.7  
SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = +3

Query: 267 WVAARSSCHQLEQLDAMLDK------ELALEGRAYGXDALVADEPLPLANAHALHGVPPM 428
           W  ARS+  + E+LD + +K      +L LEG   G         +PL N + +  +  M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395

Query: 429 LSSVLPETSQPSSSRPSL 482
           L ++LP     +   P +
Sbjct: 396 LDALLPPAESSNFLGPDV 413


>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
          Length = 314

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
 Frame = +3

Query: 222 GRFLLHL-GNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGXDALVADEPLPLAN 398
           G F  HL G +  A S    RS  +  E  DA+LD E  +  R         DEP+   N
Sbjct: 127 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 186

Query: 399 AHALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNHASPK*TKTNCRKLTTIRMTHQT 572
              L G P P+L   L + S   + +R   F   +      + T+   R L   +  H+ 
Sbjct: 187 L-LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSLEERQQKHEE 245

Query: 573 R 575
           R
Sbjct: 246 R 246


>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
 Frame = +3

Query: 222 GRFLLHL-GNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGXDALVADEPLPLAN 398
           G F  HL G +  A S    RS  +  E  DA+LD E  +  R         DEP+   N
Sbjct: 168 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 227

Query: 399 AHALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNHASPK*TKTNCRKLTTIRMTHQT 572
              L G P P+L   L + S   + +R   F   +      + T+   R L   +  H+ 
Sbjct: 228 L-LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQHSKEDLKKRFTREYVRSLEERQQKHEE 286

Query: 573 R 575
           R
Sbjct: 287 R 287


>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1938

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 189 GPDREDCSTNSGRFLLHLGNLYLASSWVAARSSCHQLEQLD 311
           G  R   S+N G +    G LY  SSW ++ S+ ++  Q+D
Sbjct: 509 GVQRMTSSSNDGAYTASAGRLYGGSSWCSSTSANNEYLQVD 549


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +3

Query: 99  YNNYEA-GISAF*SIQHIRTATGLSAQGVNFGPDREDCSTNSGRFLLHLGNLYLASSWVA 275
           YN ++A  I  F   Q      G+  QG+         S   G      G LY  SSW +
Sbjct: 157 YNRFKALRIELFGFCQDCTQPLGMENQGI-LSTAMTSSSEIDGSHSASAGRLYGGSSWCS 215

Query: 276 ARSSCHQLEQLD 311
           A SS  +  Q+D
Sbjct: 216 ATSSSSEYLQVD 227


>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 85  PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 183
           PD  AT  + PEY   +     +PPP Y   ++
Sbjct: 28  PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60


>SB_13977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 763

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
 Frame = +3

Query: 222 GRFLLHLGNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGXDALVADEPLPLANA 401
           G F   +G +  A S    RS  +  E  DA+LD E  +  R         DEP+   N 
Sbjct: 535 GFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGKEFDEPVITPNL 594

Query: 402 HALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNHASPK*TKTNCRKLTTIRMTHQTR 575
             L G P P+L   L + S   + +R   F   +      + T+   R L   +  H+ R
Sbjct: 595 -LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEER 653


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 195
           + H P S  + T +P  PP    +T++ PPAY  R S ++Q
Sbjct: 91  RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130


>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
 Frame = +3

Query: 222 GRFLLHLGNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGXDALVADEPLPLANA 401
           G F   +G +  A S    RS  +  E  DA+LD E  +  R         DEP+   N 
Sbjct: 180 GFFERLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPNL 239

Query: 402 HALHGVP-PMLSSVLPETSQPSS-SRPSLFKDDALNHASPK*TKTNCRKLTTIRMTHQTR 575
             L G P P+L   L + S   + +R   F   +      + T+   R L   +  H+ R
Sbjct: 240 -LLRGRPVPILEEDLEKLSDAGNVTRRMRFIQRSKEDLKKRFTREYVRSLEERQQKHEER 298


>SB_653| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.2)
          Length = 835

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/76 (22%), Positives = 33/76 (43%)
 Frame = +3

Query: 369 VADEPLPLANAHALHGVPPMLSSVLPETSQPSSSRPSLFKDDALNHASPK*TKTNCRKLT 548
           +    +  +  H + G PP   S    TS+P++  PS  + D +N  +         + +
Sbjct: 569 ITPSSISTSEEHKIAGKPPRPKSSKRRTSKPTTHLPSSKQHDTVNDDTKPIPHPPSVRKS 628

Query: 549 TIRMTHQTRVMRVLSP 596
           ++R +     +R LSP
Sbjct: 629 SLRKSFSQGDVRCLSP 644


>SB_585| Best HMM Match : G_glu_transpept (HMM E-Value=0.00035)
          Length = 169

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 411 HGVPPMLSSVLPETSQP-SSSRPSLFKDDA 497
           +G+PP  ++ +    +P SS+ PS+F+DD+
Sbjct: 31  YGIPPSAANFIVPRKRPLSSTAPSVFRDDS 60


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 61  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 201
           V++  +  P    +I  +PE P + ++S   PP     +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560


>SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06)
          Length = 146

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 210 STNSGRFLLHLGNLYLASSWVAARSSCHQLEQLD 311
           S+N+G +    G LY  SSW ++ S+  +  Q+D
Sbjct: 68  SSNAGAYTASAGRLYGGSSWCSSTSANTEYLQVD 101


>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
          Length = 380

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 562 VILIVVNFLQLVFVYFGLAWLSASSLKRLGREDDGWLVSGNTEDSMGG 419
           V +I  N +   FVY G       + +R+ R DDG+  +G   D   G
Sbjct: 313 VCMIYTNAVINAFVYAGFNSEFRRTFRRIYRRDDGFSSNGGNRDRRRG 360


>SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 115 PEYPPSEVYSTSEPPPAY 168
           P++PP + Y T +PP  Y
Sbjct: 29  PQHPPQQFYPTQQPPAQY 46


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 372  LPGHXFRRLCLPKRVLCRALHPAALADGMMNELLPNSKPNKGSQDEGG 229
            +  H   +L L    LCR   P   A+G     LP S+ N  S D+ G
Sbjct: 1243 IASHAPPKLVLSALGLCRVALPLMTAEGCDEVALPTSRSNLPSPDDLG 1290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,931
Number of Sequences: 59808
Number of extensions: 387217
Number of successful extensions: 1194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)