Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0503
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.2  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 396 NAHALHGVPPMLSSVLPETSQPSSSRPSLFK 488
           NA   +GV  M  ++L  T +   + P++FK
Sbjct: 112 NADGEYGVTTMTKAILHYTGKVLWTPPAIFK 142


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 402 GHLLVAKAHPLPGHXFRRLCLPKRVLC 322
           GH    +A P PG   ++LC P+   C
Sbjct: 247 GHQGNFRAGPTPGTILKKLC-PQEEAC 272


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 402 GHLLVAKAHPLPGHXFRRLCLPKRVLC 322
           GH    +A P PG   ++LC P+   C
Sbjct: 162 GHQGNFRAGPTPGTILKKLC-PQEEAC 187


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 402 GHLLVAKAHPLPGHXFRRLCLPKRVLC 322
           GH    +A P PG   ++LC P+   C
Sbjct: 481 GHQGNFRAGPTPGTILKKLC-PQEEAC 506


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 161 GGGSDVLYTSEGGYSG 114
           G G DVL T E  +SG
Sbjct: 491 GFGKDVLATDERSFSG 506


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 236  SSWEPLFGFELGSSSFIMPS 295
            S  EPL+ F   + +F MPS
Sbjct: 943  SDGEPLYVFVRSAPNFYMPS 962


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,719
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)