Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0503
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g11620.1 68415.m01249 hypothetical protein                          31   0.77 
At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein co...    29   2.4  
At1g27430.1 68414.m03343 GYF domain-containing protein contains ...    29   2.4  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    28   4.1  
At3g62010.1 68416.m06964 expressed protein                             28   4.1  
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    28   4.1  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    27   7.2  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At3g45800.1 68416.m04957 hypothetical protein                          27   9.5  
At3g19070.1 68416.m02422 cell wall protein-related similar to ve...    27   9.5  

>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 64  VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 183
           V+  +   + M  + MKPE PP ++Y   +P P  +   S
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292


>At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 638

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 450 SQVTLKTAWAVLHAKRGHLLVAKAHPLPGHXFRRLCLPKRVLCRALHPAALADGMMNELL 271
           S  + K++  VL+    + L+AKA       F++L        +A+ P  L DG+ N L 
Sbjct: 117 SNKSFKSSDGVLN--HANSLLAKAQSKLEEEFKQLLAS---YSKAVEPDRLFDGLPNSLR 171

Query: 270 PNSKPNKGSQDEGG 229
           P+S  + G +  GG
Sbjct: 172 PSSDGDGGGKPHGG 185


>At1g27430.1 68414.m03343 GYF domain-containing protein contains Pfam
            profile: PF02213 GYF domain
          Length = 1531

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 493  SSLKRLGREDDGWLVSGNTED 431
            S ++RLG + + W+V G+T+D
Sbjct: 1148 SEIRRLGEDPNSWMVGGSTDD 1168


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 255 LASSWVAARSSCHQLEQLDAMLDKELALEGRAYGXDA-LVADEPLPLANAHALHGVPPML 431
           L  S V   ++   +E +   L K+     R YG D  +VA  P P+++A A   +PP  
Sbjct: 66  LQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTVVALSPKPISSAPAPSHLPPPS 125

Query: 432 SSVLPETSQPSSSR 473
           S V+  ++    S+
Sbjct: 126 SHVIDFSASEKRSK 139


>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 294 QLEQLDAMLDKELALEGRAYGXDALVADE 380
           ++EQ++A L +++ +E   YG   LV DE
Sbjct: 124 RVEQMEARLKEDILMEASRYGNKILVTDE 152


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +3

Query: 297 LEQLDAMLDKELALEGRAYGXDALVADEPLPLANAHALHGVPPMLSSVLPE 449
           L +LD++ D  L    R  G +A V D+P P+   HA HG PP   +  PE
Sbjct: 89  LRKLDSIKDHLL----RGGGNNATVVDQP-PMG-FHAHHGPPPSYYNPYPE 133


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  VMEKEHQPDSMA--TITMKPEYPPSEVYSTSEPPP 162
           + E+E +P  +   T  +KP  PP +  +T  PPP
Sbjct: 222 IEEEESEPKEIQIDTFVVKPSSPPQQPPATPPPPP 256


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 154 PPPAYRHRVS---TSVQIAKIAALTVVASSFILGTF 252
           PPP   HR S   TS  I  +A + ++A++F+L ++
Sbjct: 19  PPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSY 54


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 MKPEYPPSEVYSTSEPPP 162
           MKPE PP ++Y   +P P
Sbjct: 458 MKPEKPPQDLYGQCQPQP 475


>At3g19070.1 68416.m02422 cell wall protein-related similar to
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii] gi|12018147|gb|AAG45420;
          Length = 346

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 79  HQPDSMATITMKPE---YPPSEVYSTSEPPPAYRHRVSTSVQIA--KIAALTVVASSF 237
           HQP S +T+         PPS   S+ +PP + R   ++SV  +    ++ T+  SSF
Sbjct: 113 HQPPSSSTLATSSSPSLQPPSMSSSSLQPPASLREFFTSSVSYSHQPSSSSTLATSSF 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,432
Number of Sequences: 28952
Number of extensions: 277520
Number of successful extensions: 1356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)