Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0501
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   5.7  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    25   7.5  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    25   10.0 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   10.0 

>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 PFEDCWLRDHCRCSQCY 162
           P ++CWL   C+   CY
Sbjct: 366 PEDECWLSTDCKVPTCY 382


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 192 HFRTARFEDTYITIR*EQSNNEWDDKXTTEFKADFLSQFDYXTWXNNRRLKPRLWRGCNV 371
           HFR  R      ++R +Q +N+ DD  T +   + L++ D     +    +P L R  + 
Sbjct: 33  HFRRNRAATVSTSVRNDQRDNDSDDS-TFDINVNQLNELDLNDSSDQLDSRPSLRRVSSA 91

Query: 372 AD 377
            D
Sbjct: 92  PD 93


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252 NEWDDKXTTEFKADFLSQFDYXTWXN-NRRLKPRLW 356
           N+WDD+ +     DF S+       N  +R+K ++W
Sbjct: 32  NQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIW 67


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 72  LNKDDVFYFFRTVFIESDT 16
           L +DD++YFF T+++ S T
Sbjct: 198 LFEDDLWYFFNTLYMLSST 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,993,713
Number of Sequences: 5004
Number of extensions: 35232
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)