Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0501
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)                38   0.007
SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)                   38   0.007
SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)              31   0.84 
SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_49069| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_31881| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)                 27   7.9  
SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_29264| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)                       27   7.9  
SB_44727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)                      27   7.9  
SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)                 27   7.9  

>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +1

Query: 127 WLRDHCRCSQCYHANTFQRAKHILELPDSKILTLQFXKNSL 249
           +LRDHC CS CYH  + QR  H+  L D K+L      N +
Sbjct: 85  YLRDHCLCSTCYHPTSEQRLTHMKNL-DLKVLPSNVHVNDI 124


>SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)
          Length = 210

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 115 FEDCWLRDHCRCSQCYHANTFQRAKHILEL 204
           F   +LRDHC C+ CYH  + QR  +I  L
Sbjct: 63  FPYMYLRDHCACASCYHQTSQQRLNYITNL 92


>SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)
          Length = 448

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 115 FEDCWLRDHCRCSQCYHANTFQRAKHILEL 204
           F   +LRDHC C+ CYH  + QR  +I  L
Sbjct: 89  FPYMYLRDHCACASCYHQTSQQRLNYITNL 118


>SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +3

Query: 258 WDDKXTTEFKADFLSQFDYXTWXNNRRLKPRLWRGCNVADRIAXVHVDEF-LDSDDSSK- 431
           W D   T++K+ +L+Q  Y     N++L+ +        +RI    + EF  D+  ++K 
Sbjct: 17  WSDGHATDYKSSWLAQHAYK---GNKKLRVKEELFLWDKERINSTTLPEFSFDAVTTNKK 73

Query: 432 ---EVFQSLLDYGVAFITGVQPSAEATETCAK 518
              E+ ++++ YG AF+        A E  AK
Sbjct: 74  DLFEISKAIIKYGFAFVNDTPTELSAVEKLAK 105


>SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)
          Length = 687

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 420 DSSKEVFQSLLDYGVAFITGVQPSAEATETCAKL*EXSTHYF 545
           DSS +   S+ +YG    T V+PS+ +T  C  + + S +YF
Sbjct: 362 DSSVQFEVSIGNYGNRLDTSVEPSSSSTAACNPVFDGSFYYF 403


>SB_10799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 79  VRVNFENGPSIPFEDCWLRDHCRCSQCYHANTFQR 183
           + V+++N     +   +LRD+C+C +CY++   QR
Sbjct: 49  LHVHWKNNQINRYPYVYLRDNCQCPKCYNSLLLQR 83


>SB_10794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 79  VRVNFENGPSIPFEDCWLRDHCRCSQCYHANTFQR 183
           + V+++N     +   +LRD+C+C +CY++   QR
Sbjct: 49  LHVHWKNNQINRYPYVYLRDNCQCPKCYNSLLLQR 83


>SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 509 RFCSF-RAWLHTSYKGNAIVKKRLKYFL*TVVRVKKLIN 396
           R C + R   HTSY+G+++  K+ K    TVV   KL N
Sbjct: 279 RECRYLRVGNHTSYRGDSVNTKQCKCIACTVVDKTKLRN 317


>SB_49069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 75  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 106


>SB_35551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 301 CYIRDMFVKCSNVHNKNTKNAANHNLVLPKAR 332


>SB_31881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 75  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 106


>SB_30009| Best HMM Match : RVT_1 (HMM E-Value=1.2e-18)
          Length = 552

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 506 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 537


>SB_29609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 159 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 190


>SB_29264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_25444| Best HMM Match : SH2 (HMM E-Value=6.4)
          Length = 252

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 206 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 237


>SB_44727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_38084| Best HMM Match : IL15 (HMM E-Value=4.1)
          Length = 164

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 55  CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 86


>SB_25299| Best HMM Match : RVT_1 (HMM E-Value=1.1e-23)
          Length = 407

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 CWLRD-HCRCSQCYHANTFQRAKHILELPDSK 216
           C++RD   +CS  ++ NT   A H L LP ++
Sbjct: 366 CYIRDMFVKCSDVHNKNTKNAANHNLVLPKAR 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,894,469
Number of Sequences: 59808
Number of extensions: 249317
Number of successful extensions: 542
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)