Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0501
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    35   0.035
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    29   1.7  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine re...    27   6.9  

>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
 Frame = +1

Query: 22  GFNENSAKKIENVIFVEXTVRVNFEN--GPS---IPFEDCWLRDHCRCSQCYHANTFQRA 186
           GF   +   ++N+      + + +EN   PS   +PF   WLRDHC   + YH  T QR 
Sbjct: 10  GFTWVTGWNLKNIRSKNDCLEIRYENEGNPSKLIMPF--VWLRDHCTSQKLYHLPTNQRK 67

Query: 187 KHILELPD-SKIL-TLQFXKNSLTMNGTISXLQNSKRTFCRNSIIXLGK 327
            +  ++   SKI  + Q   +  T +  I  +   +  F   +II  GK
Sbjct: 68  SNCCDITSLSKIKHSNQVIIDEATNSLQIVWIDGHQSKFKIGNIIREGK 116


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   MEFSVGF-NENSAKKIENVIFVEXTV 81
           +EFSV F  +NS KK+E +IF E  V
Sbjct: 29  LEFSVNFPRKNSKKKLETIIFYEKNV 54


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 102 PFDSL*RLLAQRPLQMFTMLSREYVPES*THFRTA--RFEDTYITIR*EQSNNEWDDKXT 275
           P  SL R    R  ++F ++SR+Y  +  T+F++A  R  + ++ +    SN   DD   
Sbjct: 104 PLLSLIRFFVVRDFEVFVVISRKYAKQDATNFKSAIDRLIENHLCVVVPSSN--LDDSVA 161

Query: 276 TEF 284
            +F
Sbjct: 162 LQF 164


>AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein8 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 72  LNKDDVFYFFRTVFI 28
           LN+ DVF F+RT+FI
Sbjct: 113 LNRQDVFTFYRTIFI 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,115,794
Number of Sequences: 27780
Number of extensions: 196820
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)