Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0497
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0475 - 3818121-3820565                                           28   4.3  
11_01_0788 + 6599962-6602700                                           27   7.5  
02_02_0640 - 12528075-12528363,12531326-12532311                       27   9.9  
02_01_0035 - 220036-221419,222050-222801                               27   9.9  

>05_01_0475 - 3818121-3820565
          Length = 814

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 LKMDMNNPPNQSYWFVLREDQSNVILS-TNNFVNQNPQ 232
           + +  +NPPN  YW    E  S+ ++S  N  +N NP+
Sbjct: 209 IDLSRSNPPNM-YWSWSSEKSSSALISLLNQLININPE 245


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 147 GGLFISIFNEKYLNN--YKYLHDSVLKNRRIVFSMKTLYT*LQGY 19
           GGLF S+  E Y+ N  YK L D ++ N  I   +   Y  L G+
Sbjct: 382 GGLFSSVKLESYIWNEMYKQLGDELVNNDHIRAILNLSYRDLPGH 426


>02_02_0640 - 12528075-12528363,12531326-12532311
          Length = 424

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 TKYHIALIFSKYKPIALIWRVVHIH 128
           +K  +AL F  Y P A +WRV+  H
Sbjct: 381 SKKRLALEFQVYNPAAKMWRVLTTH 405


>02_01_0035 - 220036-221419,222050-222801
          Length = 711

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 373 WDRSKIRLLLKLC--LEDRFKNINXQKTLWHDIASHVGTTG 489
           W + ++  L+++   LEDRF+    +  LW ++++ +   G
Sbjct: 526 WPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAG 566


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,761,113
Number of Sequences: 37544
Number of extensions: 220892
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)