Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0494
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    28   0.90 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    26   4.8  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   6.3  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   8.4  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   8.4  

>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 90  VLFMN*SF-ELINKRSVLEIVYSSKLQK*LSYYFALTLNLNKARL 221
           +LF+N    E +  R  LE  Y+  L K  SY+  L+LN++  +L
Sbjct: 270 ILFINNRLVESVELRHALEETYAKYLHKGASYFVYLSLNMSPEQL 314


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -2

Query: 258 YTTLLVLIFGIKIIWLYLN*V*EQSSNLIIFEV*KSTQFLKHCVCLLVQNFN 103
           Y+     I    II +YL+    ++ N   F +  S  F KHCV L  +NF+
Sbjct: 616 YSQFYFCILSSAIIKMYLDFEFNENFNATTFGLLSS--FTKHCVWLKFRNFD 665


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 425 SRCSSLLAVPHFETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           S+ +S  A    ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 203 SKTTSPTAGTITETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 249



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 565 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 599



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 600 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 634



 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 740 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTVT 774



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 355 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 389



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+    T  STF  S T  GT+ V+  TA T T
Sbjct: 495 ETIVSGSKTFTSTFPASGTTSGTVEVVEPTAGTIT 529



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -3

Query: 389 ETILKMIVTKPSTFLFSSTAVGTLSVL*QTAPTET 285
           ETI+   V   STF  S T  GT+ V+  TA T T
Sbjct: 635 ETIVSGSVGYTSTFPASGTTSGTVEVVEPTAGTIT 669


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 577 KQHQQLLETASQIVLLCRALFISARI*MQKLNLPQ 473
           KQHQQL E A      C  L  S  +  Q L+L Q
Sbjct: 111 KQHQQLKELAKLTASQCTRLDSSTALIKQLLDLVQ 145


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 580 YKQHQQLLETASQIVLLCRALFISARI*MQKLNLP 476
           Y  HQ +LET    V+    +  +ARI   K+NLP
Sbjct: 289 YIAHQLILETIVVEVMNSHPINSNARILRMKVNLP 323


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 425 SRCSSLLAVPHFETILKMIVTKPS 354
           S C+  +AVP F   +K++  KPS
Sbjct: 174 SGCNDGMAVPFFYFAIKLLTVKPS 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,429
Number of Sequences: 5004
Number of extensions: 49625
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)