Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0494
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine re...    29   3.3  
AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine re...    29   3.3  
U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1

Query: 217 DYFYAENEYQ*CGVIKMIGKYLDVSVGAVCYNTDKV 324
           D FY E  Y  CG +  +  Y DV VGAVC   D +
Sbjct: 123 DKFYVEARY--CGELGRLAYYNDVVVGAVCCRIDDI 156


>AF039047-2|ABR92603.1|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform b protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 364 VTIILSMVSKCGTASSEEQRLLTYQWLE 447
           + +ILSM+ +  T   EE +LLT+ W E
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSE 91


>AF039047-1|AAB94224.2|  403|Caenorhabditis elegans Serpentine
           receptor, class r protein4, isoform a protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 364 VTIILSMVSKCGTASSEEQRLLTYQWLE 447
           + +ILSM+ +  T   EE +LLT+ W E
Sbjct: 64  IVVILSMLYRAITFLGEEGKLLTFNWSE 91


>U39995-5|AAF99994.4|  250|Caenorhabditis elegans Hypothetical
           protein M60.6 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 268 IGKYLDVSVGAVCYNTDKVPTAVLEN-KNVEGFVTIILSMVSKCGTASSEEQRLLTY--Q 438
           +G  + V  G   Y + ++ T  L   + +  F  +++ +V  CG+AS     ++TY   
Sbjct: 53  LGIIMIVLSGLADYASTRINTIRLHGLEEICSFYFVLVGLVGICGSASYRRGLVITYLVM 112

Query: 439 WLEYISMFSNQAVANSTFAFKFLQ 510
            +  I +F    +  S+F   F Q
Sbjct: 113 CIHSIFIFVPAIITVSSFDIHFYQ 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,327,168
Number of Sequences: 27780
Number of extensions: 276306
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)