Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0492
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   0.81 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.7  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 313 VLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSV 426
           +L+   R   +   C  G  V E+G++WI    +P  V
Sbjct: 22  LLDDGTRTRNKAAECVFGKQVRELGSQWIPDLGVPIGV 59



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 226 GTKGDNCRCGMAGLSAAHRLTQCG 297
           GT     RC  AG +   R T CG
Sbjct: 912 GTTARVVRCVCAGSTGTRRATGCG 935


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 113 RLVCNAVNTSSYRLYSGSVAPGQEQCILDSCS 208
           ++VC   N S YR+  G   P  E  I D C+
Sbjct: 88  KVVCYYTNWSQYRVKIGKFTP--EHIIPDLCT 117


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 140 SSYRLYSGSVAPGQEQCILDSCSISPTCQEPRVIIV 247
           +SY      +  G   CI  S   SP C E  V+++
Sbjct: 84  NSYPAIVADILSGAIACIGFSWIASPACTELEVVML 119


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 383 WVQNGYLELVYQILSILW 436
           WVQ+G+ ELV      LW
Sbjct: 496 WVQHGHQELVLGGEVCLW 513


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 307 FVVLEANERPGGRIHSCW 360
           + VLE   +  G +++CW
Sbjct: 217 YKVLEEKYKTSGSLYTCW 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,788
Number of Sequences: 336
Number of extensions: 3317
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)