Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0492
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44) 48 6e-06
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092) 31 0.68
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_11278| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 30 1.6
SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.7
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 28 4.8
SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 28 6.3
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9) 28 6.3
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYT 432
G+AGLSAA L + +LEA+ R GGRIH+ + + V+E+GA WI + N +Y
Sbjct: 13 GIAGLSAALNLQNSKEVDVTILEASSRIGGRIHTSTINNEVVELGAGWIHDS-TSNPLYD 71
Query: 433 LASQ 444
A +
Sbjct: 72 AARE 75
>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
Length = 1021
Score = 48.0 bits (109), Expect = 6e-06
Identities = 29/73 (39%), Positives = 40/73 (54%)
Frame = +1
Query: 205 QYQSDLSGTKGDNCRCGMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEM 384
Q Q + TK G+AG++AA L + G+ F+VLEA + GGR+ S + IE
Sbjct: 32 QQQHQVYTTKVLILGAGVAGIAAASVLHEEGV-GFIVLEAKDYIGGRVRSVEFAEGSIET 90
Query: 385 GAEWISGACLPNS 423
GA WI A P+S
Sbjct: 91 GANWIHRASHPDS 103
>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRNFVVLEANERPGGRIHSCWLGDAVIEMGAEWISG 405
G+AGL AA +L GI + ++EA ER GGR+ + G + ++GA ++G
Sbjct: 259 GIAGLMAARQLQSFGI-DVTMVEARERVGGRVATFRKGQYIADLGAMVLTG 308
>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
Length = 729
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = +1
Query: 253 GMAGLSAAHRLTQCGIRN----FVVLEANERPGG 342
G GL AA+RL Q GI V+LE E+PGG
Sbjct: 50 GPTGLGAAYRLHQLGISRSNTQVVILEEQEKPGG 83
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 30.7 bits (66), Expect = 0.90
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 411 TSSRYPFCTHLNNCISKPT*MYSSTRTLIRLQDYKITNPTLS*PVCR*KSCHS 253
T SR+ CT ++ +S+P S+ TL R +++ TLS PV R S H+
Sbjct: 1048 TLSRHVTCTLSSHTLSRPVTRTLSSHTLSRPVTRTLSSHTLSRPVTRTLSSHA 1100
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 411 TSSRYPFCTHLNNCISKPT*MYSSTRTLIRLQDYKITNPTLS*PVCR*KSCH--SAPTII 238
T SR+ CT ++ +S+ S+ TL R +++ TLS PV R S H S P
Sbjct: 1035 TLSRHVTCTLSSHTLSRHVTCTLSSHTLSRPVTRTLSSHTLSRPVTRTLSSHTLSRPVTR 1094
Query: 237 TLGS 226
TL S
Sbjct: 1095 TLSS 1098
>SB_11278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 295 GIRNFVVLEA--NERPGGRIHSCWLGDAVIEMGAEWISGACLPNSVYTLASQ 444
GI +LE + R GG IH+ + + V+E+GA WI + N +Y A +
Sbjct: 6 GIICLCILEKCRSSRIGGSIHTSTINNEVVELGAGWIHDS-TSNPLYDAARE 56
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 485 DESNLCKGVCNSLSCDARV*T-EFGKQAPDIHSAPISITASPSQHECILPPGRSFASKTT 309
D+S++ K NS A+V +F ++ P +H+A IS + +E R F K
Sbjct: 90 DDSHV-KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAE 148
Query: 308 KLRIPH 291
+LRI H
Sbjct: 149 RLRIRH 154
>SB_39876| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 166 CGSWSRAVYLRLLQYQSDLSGTKGDNCR--CGMAGLSAAH 279
CG+W+RA Y LQY DNC+ C + GL+A +
Sbjct: 700 CGAWARAGYCHRLQYVK-------DNCKNSCQVCGLTACN 732
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 392 SAPISITASPSQHECILPPGRSFASKTTKLRIPH*VNRCAAESPAIP 252
S P SIT+SPS ILP R+ KT + + +++PAIP
Sbjct: 1842 STPTSITSSPSSPSTILPETRTI-PKTNVVEGGAKITPKPSDAPAIP 1887
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 205 QYQSDLSGTKGDNCRCGMAGLS-AAHRLTQCGIRNFVVLEAN 327
QYQ SGT G R G + + A L + G+ ++VV+ A+
Sbjct: 346 QYQDGQSGTPGSGARFGASTFTLTASGLVRLGVGDYVVIRAH 387
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 271 LKVLPFRTYNYHPWFLTSRTDTARV*DTLLLTRSHRAT 158
+K+L + +N+HP+ TD +++ DT + S A+
Sbjct: 693 MKILMYTHFNWHPFDRVDDTDVSKIYDTFISYSSQDAS 730
>SB_15869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1420
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 474 PL*RCLQQSVLRCQSIDRIW*TSSRYPFCTHLNNCISKP 358
P+ R + L+ S++ W + RY FC +CI+ P
Sbjct: 999 PVIRAFIEQTLQDMSLECPWLRNMRYQFCVMCPSCIAGP 1037
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 401 LELVYQILSILWHRRTDCCRHLYRG*TRRVVYSVQAGTCSRFT 529
L L+ + I+W+RR + RH+ V SV TC+ T
Sbjct: 1127 LLLLIIVAGIVWYRRRNSTRHIANKRVPDAVSSVTNATCNALT 1169
>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
Length = 535
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 445 PAMPEYRQNLVNKLQISIL 389
P++PE ++NL NKL ISI+
Sbjct: 307 PSLPERQRNLTNKLLISII 325
>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1881
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 463 VSATVCPAMPEYRQNLVNKLQISIL 389
+ + P++PE ++NL NKL +SI+
Sbjct: 1480 IKEVLVPSLPERQRNLTNKLLMSII 1504
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,806
Number of Sequences: 59808
Number of extensions: 416516
Number of successful extensions: 1027
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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