Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0487
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      49   4e-06
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 46   2e-05
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      46   2e-05
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)                36   0.037
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.26 
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                31   1.1  
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                31   1.1  
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   27   9.8  

>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 27/64 (42%), Positives = 32/64 (50%)
 Frame = +2

Query: 305  RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 484
            R LQ EL  L +EP  G TV+    S N   W V + G PGTLY G  F     F + YP
Sbjct: 1127 RALQLELKKLTEEPVEGFTVEVPDES-NTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYP 1185

Query: 485  FDSP 496
            +  P
Sbjct: 1186 YSPP 1189



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 13/45 (28%)
 Frame = +1

Query: 529  HPHVYSNGHICLSXL---TDD----------WSPALSVQSVCLSI 624
            HP++Y +G +C+S L    DD          W+P  +V+++ LS+
Sbjct: 1199 HPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 1243


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 305 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 484
           +R+Q+EL  +  +PPP  +        +L  W   + G PG++YEG  F L   F + YP
Sbjct: 138 KRIQRELTEITLDPPPNCSAG--PKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYP 195

Query: 485 FDSPE 499
           F  P+
Sbjct: 196 FKPPK 200


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 34/65 (52%)
 Frame = +2

Query: 305 RRLQKELMSLMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYP 484
           +R+Q+EL  +  +PPP  +        +L  W   + G PG++YEG  F L   F + YP
Sbjct: 98  KRIQRELTEITLDPPPNCSAG--PKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYP 155

Query: 485 FDSPE 499
           F  P+
Sbjct: 156 FKPPK 160



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 529 HPHVYSNGHICLSXLTDDWSPALSVQSVCLSI 624
           +P     G +CL  L D WSPAL++  V LSI
Sbjct: 154 YPFKPPKGMVCLDILKDSWSPALTISKVLLSI 185


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 529 HPHVYSNGHICLSXLTDDWSPALSVQSVCLSIR 627
           HP+V  NG IC++ L  DW P L ++ V L+++
Sbjct: 153 HPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVK 185


>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
          Length = 181

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 398 WTVHMEGVPGTLYEGEKFVLQFKFTNKYPFDSPEV 502
           W   + G PG++YEG  F L   F   YPF  P+V
Sbjct: 54  WYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPPKV 88


>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 626 RIERQTDCTDSAGDQSSVXIERQMCPFEYTCG*TGMLLP 510
           R +R+ DCTD + ++  V   +   P+E+TC  +G  +P
Sbjct: 401 RCDREFDCTDRSDERGCV--NKTCAPYEFTCAFSGRCIP 437


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 332 LMKEPPPGVTVDGDQASQNLTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYPFDSP 496
           L K+P  G +  G    ++L  W + + G PGT YE   F     F  +YP   P
Sbjct: 344 LQKKPVEGFSA-GLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPP 397


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 529 HPHVYSNGHICLSXL----TDDWSPALSVQSVCLSIRV 630
           HP++ S+G ICL  L       W PAL++ SV  +I +
Sbjct: 40  HPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILI 77


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 529 HPHVYSNGHICLSXL----TDDWSPALSVQSVCLSIRV 630
           HP++ S+G ICL  L       W PAL++ SV  +I +
Sbjct: 54  HPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILI 91


>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 389 LTLWTVHMEGVPGTLYEGEKFVLQFKFTNKYPFDSPEV 502
           L  + V   G  GT YEG  + ++     KYPF SP +
Sbjct: 47  LNEFIVKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSI 84


>SB_24794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 444 SPSYNVPGTPSMCTVHSVRF*LA*SPSTVTPGGGS 340
           SPS+  PGTP+  T  +V F  + +PS+ + G  S
Sbjct: 42  SPSHTPPGTPTTPTTSTVSFLPSTTPSSSSQGTSS 76


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 308 RLQKELMSLMKEPPPGVTVDGDQAS 382
           +L  E + ++  PPPGV VDG  +S
Sbjct: 311 KLGSEYLDVISGPPPGVKVDGAPSS 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,548
Number of Sequences: 59808
Number of extensions: 381669
Number of successful extensions: 746
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)