Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0483
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 85 9e-18
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 29 0.34
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.2
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 4.2
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar... 25 5.6
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz... 25 7.3
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 7.3
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.7
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 25 9.7
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 25 9.7
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 84.6 bits (200), Expect = 9e-18
Identities = 36/84 (42%), Positives = 56/84 (66%)
Frame = +2
Query: 260 QFMDMLFPGSVPMKRIKFKTNLEHEYIQNFKILQAGFKKMGVDKIVPIDKLVKGRFQDNF 439
Q D ++ +P+K++ F+ N E++YI N+K+LQ F K G+DK+V ++L + + QDN
Sbjct: 34 QIFDSIYQ-DIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNL 92
Query: 440 EFLQWFKKFFDANYGGAAYDAWRR 511
EF+QW K+F+D Y G YDA R
Sbjct: 93 EFVQWAKRFWDQYYPGGDYDALAR 116
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 293 PMKRIKFKTNLEHEYIQNFKILQAGFK 373
P KR+K KT L+HE+ + ++GF+
Sbjct: 388 PSKRVKAKTALQHEFFNACGVTRSGFE 414
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 308 KFKTNLEHEYIQNFKILQAGFK 373
K TNLE+EY +KI+Q FK
Sbjct: 748 KSSTNLENEYQTPWKIIQNPFK 769
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +3
Query: 213 SNFAKIEELCTGAAIASSWTCCSLAVYQ*KESNLRQIWNMNIYRTLKYYKLVL 371
+ +A++E L +A + ++Q S LR I N+N+Y+ + KL++
Sbjct: 632 NTYAQLEHLSGAFTMAET---IFKTIFQIHASQLRYIDNLNVYKNWAFRKLLI 681
>SPCC970.06 |||cargo receptor for soluble proteins
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 139 TFTAIFTMYQPLMKKFLTV 83
TF A FT Y PL+ +FL V
Sbjct: 45 TFMAPFTPYMPLLGRFLIV 63
>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 7.3
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = -3
Query: 414 TSLSMGTILSTPIFLKPACNILKFCIYSCSKFVLNLILFIGTLPGNSMSMNWQWRHLYTT 235
+ ++ G L T +F F I C L L L N + W+HLY T
Sbjct: 96 SEITKGNTLKTRMFKTEGVKGKCFVICFCPNHNLTLPLMSAEAICNVVET---WKHLYVT 152
Query: 234 LRSSQSLTG 208
L+ +SL G
Sbjct: 153 LK-KESLEG 160
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 327 SKFVLNLILFIGTLPGNSMSMNWQWRHLYTTL 232
SK + NL IG P N +S ++ WR Y L
Sbjct: 232 SKVIENLAA-IGYEPNNMLSASYDWRLSYANL 262
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 345 FCIYSCSKFVLNLILFIGTLP 283
F IYSC++ + N L + TLP
Sbjct: 171 FSIYSCAEKISNTSLLLCTLP 191
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 547 GRPSPVPHGQTFSAP 503
GR PVP GQT+ P
Sbjct: 70 GRKRPVPKGQTYGKP 84
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 547 GRPSPVPHGQTFSAP 503
GR PVP GQT+ P
Sbjct: 70 GRKRPVPKGQTYGKP 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,801
Number of Sequences: 5004
Number of extensions: 54563
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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