Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0482
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   1.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   3.9  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   6.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 546  DVNYFHLSENNLEIRSSGINMNVKICVPS-AELDKFLLLFK 427
            D++ +H++  N + +S+     + +C PS A +D+ LL  K
Sbjct: 1172 DLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDEVLLRLK 1212


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 93  PLNTRWAVSSPTNLSNKKRNAPEFKSAKLYDYY 191
           P N   ++ SPT+L+N   N  + +  KLY+ Y
Sbjct: 527 PKNALHSMPSPTSLANLPSNLSDTQYKKLYNLY 559


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
 Frame = -1

Query: 458  RNSINFYCFSKGKYPT----KRFNIQLIIVSKTMFTVIKNT 348
            R + N+YCF++ +Y T    K  N+ +I +SK +   ++N+
Sbjct: 908  RETPNYYCFAQMEYLTVTEVKMLNVLMISLSKFIRNSLRNS 948


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +3

Query: 459 HSVRIFSRSYLC----PSFEFRDCFLTNEN 536
           HS RIF  S  C    PSF+ R CF + +N
Sbjct: 361 HSWRIFFGSDRCANHPPSFDERSCFTSKQN 390


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 219 LVSPSALVENSNHTVLHS*IRVHFFFYCLDLWANSQPTW 103
           +++  +  + SN  VL S +R  +   C D   N QP W
Sbjct: 1   MINSKSKKKESNALVLKSLLREPYNKVCADCKRNEQPRW 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,841
Number of Sequences: 5004
Number of extensions: 42554
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)