Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0482
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821...    27   9.3  

>05_03_0079 +
           8212648-8212724,8212844-8212993,8213211-8213351,
           8213658-8213820,8213901-8214094,8214174-8214369,
           8214462-8214539,8214933-8215162,8215574-8215688,
           8215878-8215952,8216032-8216172,8216309-8216512,
           8216586-8216747,8216787-8216794,8217099-8217223,
           8217316-8217438,8218177-8218307,8218527-8218658
          Length = 814

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 249 PA*LNRFKLILVSPSALVENSNHTVLHS*IRVH 151
           PA L+RF L+ +      EN+++ + H  +RVH
Sbjct: 527 PAILSRFDLVYIMIDEPDENTDYHIAHHIVRVH 559


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,163
Number of Sequences: 37544
Number of extensions: 226214
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)