Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0479
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.1  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   5.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.7  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   5.7  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   7.5  

>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +2

Query: 77  PEPTKVQVEYINEEKPIKXGSGSQSPLALLAATCSRLGAANMGPEQQQSDKEQQHH 244
           P  T V VE   EE PI  G G  +  A  +A  S  G      E QQ+ +E   H
Sbjct: 318 PHTTTVTVE---EESPIALGQGGVTHEATTSARASASGIPGAFEEVQQTVQEDLPH 370


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +2

Query: 191 AANMGPEQQQSDKEQQH--HFSP 253
           A N  P+QQQ  ++QQH  H +P
Sbjct: 148 ALNQPPQQQQQQQQQQHQQHATP 170


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 450 RSNNSCIQQQFYNNSSSSRSKGY*FCCSAAVASSR 554
           +S+++ +   FY+NS+SSRS  +    S +  SS+
Sbjct: 413 KSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -1

Query: 111 LMYSTCTFVGSGDI-IYFMMANKNNSLSTYRTHHP 10
           L Y+     G  D+  Y  M NKN  L+ Y   HP
Sbjct: 355 LSYAAKMLFGIDDVGPYVSMNNKNGDLTEYTLRHP 389


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 127 YRFFLVDVFHLHFCRLRRHYLLYD 56
           +R F V VF     RLR+ +L YD
Sbjct: 340 FRKFPVSVFFCELPRLRKQWLFYD 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,923
Number of Sequences: 5004
Number of extensions: 16288
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)