Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0479
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.069
SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.069
SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)               29   1.9  
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_15571| Best HMM Match : PsiB (HMM E-Value=4.7)                      29   3.4  
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_202| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.9  

>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 15/19 (78%), Positives = 16/19 (84%)
 Frame = +2

Query: 134 GSGSQSPLALLAATCSRLG 190
           G G  SPLALLAATCSR+G
Sbjct: 118 GYGKPSPLALLAATCSRIG 136


>SB_29805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = +2

Query: 68  IMSPEPTKVQVEYINEEKPIKXGSGSQSPLALLAATCSRLG 190
           +++    K   EYI +  P+K     +SPLALLAATCS +G
Sbjct: 236 MLTQSVAKCGQEYI-QPLPLKEEEQKKSPLALLAATCSSIG 275


>SB_19824| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-26)
          Length = 550

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +2

Query: 149 SPLALLAATCSRLG 190
           SPLALLAATCS++G
Sbjct: 26  SPLALLAATCSKIG 39


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 177 QVAANK---ARGDWLPLPXFIGFSSLMYSTCTFVGSGDIIYFMMANKNNS 37
           QV+ NK     GD LPLP F+ +  ++   CT        + M+    NS
Sbjct: 163 QVSLNKFVHLAGDLLPLPLFVPYMDMLVGLCTSPQGAHHCFNMLKTTANS 212


>SB_15571| Best HMM Match : PsiB (HMM E-Value=4.7)
          Length = 530

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -1

Query: 177 QVAANK---ARGDWLPLPXFIGFSSLMYSTCTFVGSGDIIYFMMANKNNS 37
           QV+ NK     GD LPLP F+ +  ++   CT        + M+    NS
Sbjct: 298 QVSLNKFVHLAGDLLPLPLFVPYMDMLVGLCTSPQGAHHCFNMLKTTANS 347


>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1148

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 83   PTKVQVEYINEEKPIKXGSGSQSPLALLAATCSRLGAANMGPEQQQSDKEQQHH 244
            P+  + + ++   PI+    S++ +AL+   CS L A   G   QQ     Q H
Sbjct: 1054 PSGTEAKQLDLPHPIQLVRLSENEMALVGVLCSFLSACPSGASAQQITAHVQRH 1107


>SB_202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 118 FLVDVFHLHFCRLRRHYLLYDGK 50
           F  + +  H CR R H LLYDG+
Sbjct: 29  FQAEKWQQHNCRSRPHQLLYDGR 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,953
Number of Sequences: 59808
Number of extensions: 148910
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)