Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0479
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    29   1.7  
Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical pr...    27   6.9  

>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 EYINEEKPIKXGSGSQSPLALLAATCSRLG 190
           +YI +  P+    G +SPLALLA TC  +G
Sbjct: 8   QYITDFTPVPAEPG-KSPLALLAKTCETIG 36


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 101 EYINEEKPIKXGSGSQSPLALLAATCSRLG 190
           +YI +  P+    G +SPLALLA TC  +G
Sbjct: 8   QYITDFTPVPAEPG-KSPLALLAKTCETIG 36


>Z46934-7|CAA87047.1|  472|Caenorhabditis elegans Hypothetical
           protein ZK1320.9 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 107 INEEKPIKXGSGSQSPLALLAATCSRLGAANM 202
           +N +  I  G+ + +P  LL A C R+ +AN+
Sbjct: 52  VNSDSDIYVGNHASAPNVLLEALCRRVDSANL 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,079,695
Number of Sequences: 27780
Number of extensions: 103138
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)