Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0478
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   1.6  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   4.8  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   6.3  

>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = +3

Query: 213 EDTYITI--R*EQSNNEWDDKHTTEFKADFLSQFDYKTWKNNRRLKPRLWRGCNVADRIA 386
           ED  + I  R E    +    HTT F  DF S  D   W+ ++ +K    R  N  D  +
Sbjct: 76  EDRLLAIQSRTEMKEGQQRQYHTTYFYIDFCSTIDSIKWRMHQLVKTVEDRMRNDFD--S 133

Query: 387 KVHVDEFLDSDDSSKEVFQSLLDYG 461
           K +V  F +   SS +V   + + G
Sbjct: 134 KGYVCPFCNKKFSSLDVLSLVTNEG 158


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 192 HFRTARFEDTYITIR*EQSNNEWDDKHTTEFKADFLSQFDYKTWKNNRRLKPRLWRGCNV 371
           HFR  R      ++R +Q +N+ DD  T +   + L++ D     +    +P L R  + 
Sbjct: 33  HFRRNRAATVSTSVRNDQRDNDSDDS-TFDINVNQLNELDLNDSSDQLDSRPSLRRVSSA 91

Query: 372 AD 377
            D
Sbjct: 92  PD 93


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 PFEDCWLRDHCRCSQCY 162
           P ++CWL   C+   CY
Sbjct: 366 PEDECWLSTDCKVPTCY 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,546
Number of Sequences: 5004
Number of extensions: 46324
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)