Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0478
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    35   0.051
U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    31   0.82 
U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine re...    28   4.4  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 34.7 bits (76), Expect = 0.051
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 7/109 (6%)
 Frame = +1

Query: 22  GFNENSAKKIENVIFVERTVRVNFEN--GPS---IPFEDCWLRDHCRCSQCYHANTFQRA 186
           GF   +   ++N+      + + +EN   PS   +PF   WLRDHC   + YH  T QR 
Sbjct: 10  GFTWVTGWNLKNIRSKNDCLEIRYENEGNPSKLIMPF--VWLRDHCTSQKLYHLPTNQRK 67

Query: 187 KHILELPD-SKIL-TLQFDKNSLTMNGTISTLQNSKRTFCRNSIIKLGK 327
            +  ++   SKI  + Q   +  T +  I  +   +  F   +II+ GK
Sbjct: 68  SNCCDITSLSKIKHSNQVIIDEATNSLQIVWIDGHQSKFKIGNIIREGK 116



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
 Frame = +3

Query: 258 WDDKHTTEFKADFLSQFDYKTWKN--NRRLKPRLWRGCNVADRIAKVHVDEFLDSDDSSK 431
           W D H ++FK   + + + K  KN  N      LW   ++ D      V     S  S +
Sbjct: 98  WIDGHQSKFKIGNIIR-EGKVEKNVSNDNKIYELWNSKSLKD------VPRISKSTLSLQ 150

Query: 432 EVFQSLLDYGVAFITGVQPSAEATE-TCAKL*EEFNTLF 545
              ++L+ YGV  + GV+ ++EATE  C  L    +T F
Sbjct: 151 SFSKNLVKYGVIIVDGVEGTSEATEKLCQSLVPVHDTFF 189


>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 23/72 (31%), Positives = 43/72 (59%)
 Frame = -3

Query: 449 KRLKYFL*TVVRVKKLINVYFSYSISNVTAAPQSRLQSAIVFPSFIIELRQKVRFEFCSV 270
           +RLKY    +V ++KLIN++FS       A+ + R+ + + F   + E R +  F   SV
Sbjct: 34  RRLKY---VIVLIRKLINLHFS-------ASSRDRISNPVFFD--VSESRMRRWF---SV 78

Query: 269 LIVPFIVRLFLS 234
           +++PF+V++ L+
Sbjct: 79  ILLPFLVKIILA 90


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 7   MEFSVGF-NENSAKKIENVIFVERTV 81
           +EFSV F  +NS KK+E +IF E+ V
Sbjct: 29  LEFSVNFPRKNSKKKLETIIFYEKNV 54


>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 482 ATKRGSYRNVCXALGGIQHTIFGATWEFTTVA 577
           +TKRG Y +   AL G++  +F   + F T+A
Sbjct: 241 STKRGDYSSTSKALTGVKRKLFAGFFVFATMA 272


>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 160 YHANTFQRAKHILELPDSKILTLQFDK-NSLTMNGTISTLQNSKRTF 297
           YH N ++ A  ++++  S  L +Q+D  ++  +NG I  +    + +
Sbjct: 156 YHLNNYEDAMDVIQMDQSNNLKIQYDTFHAQQINGQIGAIMRKLKDY 202


>AF039051-7|AAB94267.2|  304|Caenorhabditis elegans Serpentine
           receptor, class x protein8 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 84  TYRSLNKDDVFYFFRTVFI 28
           T  +LN+ DVF F+RT+FI
Sbjct: 109 TVITLNRQDVFTFYRTIFI 127


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 102 PFDSL*RLLAQRPLQMFTMLSREYVPES*THFRTA 206
           P  SL R    R  ++F ++SR+Y  +  T+F++A
Sbjct: 104 PLLSLIRFFVVRDFEVFVVISRKYAKQDATNFKSA 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,975,035
Number of Sequences: 27780
Number of extensions: 258292
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)