Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0478
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate amino... 30 1.0
At4g32850.6 68417.m04675 nucleotidyltransferase family protein c... 29 1.8
At4g32850.5 68417.m04674 nucleotidyltransferase family protein c... 29 1.8
At4g32850.4 68417.m04671 nucleotidyltransferase family protein c... 29 1.8
At4g32850.3 68417.m04673 nucleotidyltransferase family protein c... 29 1.8
At4g32850.2 68417.m04672 nucleotidyltransferase family protein c... 29 1.8
At4g32850.1 68417.m04676 nucleotidyltransferase family protein c... 29 1.8
At2g25850.2 68415.m03104 nucleotidyltransferase family protein c... 29 1.8
At2g25850.1 68415.m03103 nucleotidyltransferase family protein c... 29 1.8
At3g62820.1 68416.m07058 invertase/pectin methylesterase inhibit... 28 4.1
At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containi... 28 4.1
At3g06560.1 68416.m00762 poly (A) polymerase family protein simi... 28 4.1
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 5.4
At4g03030.1 68417.m00411 kelch repeat-containing F-box family pr... 28 5.4
At1g17980.2 68414.m02224 nucleotidyltransferase family protein c... 27 7.2
At1g17980.1 68414.m02225 nucleotidyltransferase family protein c... 27 7.2
At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ... 27 9.5
>At3g24090.1 68416.m03025 glucosamine--fructose-6-phosphate
aminotransferase [isomerizing], putative /
hexosephosphate aminotransferase, putative /
glucosamine-6-phosphate synthase, putative /
D-fructose-6-phosphate amidotransferase, putative /
GLCN6P synthase, putative similar to SP|O94808
Glucosamine--fructose-6-phosphate aminotransferase
[isomerizing] 2 (EC 2.6.1.16) (Hexosephosphate
aminotransferase 2) (D-fructose-6- phosphate
amidotransferase 2) {Homo sapiens}; contains Pfam
profiles PF00310: Glutamine amidotransferases class-II,
PF01380:SIS domain
Length = 691
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 162 IAL*TSAMVSEPTVFK--GNRRAILEVHTYRSLNKDDVFYF 46
IA+ S+ S P VF+ GN +++ T LN D+VFYF
Sbjct: 40 IAIDNSSPSSSPLVFRQAGNIESLVNSITNTDLNLDEVFYF 80
>At4g32850.6 68417.m04675 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.5 68417.m04674 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 745
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.4 68417.m04671 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 730
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.3 68417.m04673 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 735
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.2 68417.m04672 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 738
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At4g32850.1 68417.m04676 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 741
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 227 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 256
>At2g25850.2 68415.m03104 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 800
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258
>At2g25850.1 68415.m03103 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain; identical to cDNA GI:31747890
Length = 787
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RCL W A KRG Y NV LGG+ + A
Sbjct: 229 RCLKYW-AKKRGVYSNVTGFLGGVNWALLVA 258
>At3g62820.1 68416.m07058 invertase/pectin methylesterase
inhibitor family protein low similarity to
pectinesterase from Arabidopsis thaliana SP|Q43867,
Lycopersicon esculentum SP|Q43143; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 194
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 83 RTVLSTKMTFSIFFALFSLNPT 18
+T +S+ +TF++ F L SLNPT
Sbjct: 2 KTPMSSSITFALVFFLLSLNPT 23
>At3g56550.1 68416.m06288 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 581
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +3
Query: 336 RLKPRLWRGCNVADRIAKVHVDEFLDSDDSSKEVFQSLLDYGVAFITG 479
R+ R+ +GCN ++ K+H ++ +F LL + +TG
Sbjct: 6 RVIVRMLQGCNSMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTG 53
>At3g06560.1 68416.m00762 poly (A) polymerase family protein similar
to SP|Q9BWT3 Poly(A) polymerase gamma (EC 2.7.7.19) (PAP
gamma) (Polynucleotide adenylyltransferase gamma) (SRP
RNA 3' adenylating enzyme) {Homo sapiens}; contains Pfam
profiles PF04926: Poly(A) polymerase predicted RNA
binding domain, PF04928: Poly(A) polymerase central
domain
Length = 483
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 422 QFKGSISIAS*LWRCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
Q S+ + L RC+ W A +RG Y N+ LGG+ I A
Sbjct: 168 QLVPSLELFQSLLRCVKLW-AKRRGVYGNLNGFLGGVHMAILAA 210
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +1
Query: 55 NVIFVERTVRVNFENGPSIPFEDCWLRDHCRCSQCYHANTFQRAKHILELP---DSKILT 225
+ + ++R ++ E+G + F LRD + + F H L +S
Sbjct: 40 SAVSLQRVKKLAAEHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKP 99
Query: 226 LQFDKNSLTMNGTISTLQNSKRTFCRNSIIKLGKTI 333
L + N+L GTI+ L+ + C+N + T+
Sbjct: 100 LLYYNNNLV--GTITLLEVMAQHGCKNLVFSSSATV 133
>At4g03030.1 68417.m00411 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 442
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 479 CATKRGSYRNVCXALGGIQHTIFGA 553
CA GS + A GG +HT+FGA
Sbjct: 195 CAAMPGSCGRIIVAGGGSRHTLFGA 219
>At1g17980.2 68414.m02224 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 586
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RC+ W A +RG Y NV LGGI + A
Sbjct: 90 RCMRFW-AKRRGVYSNVSGFLGGINWALLVA 119
>At1g17980.1 68414.m02225 nucleotidyltransferase family protein
contains Pfam profiles: PF01909 nucleotidyltransferase
domain, PF04926 poly(A) polymerase predicted RNA
binding domain
Length = 713
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 461 RCLYNWCATKRGSYRNVCXALGGIQHTIFGA 553
RC+ W A +RG Y NV LGGI + A
Sbjct: 217 RCMRFW-AKRRGVYSNVSGFLGGINWALLVA 246
>At1g32240.1 68414.m03966 myb family transcription factor (KAN2)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA GARP-like putative
transcription factor KANADI2 (KAN2) GI:15723594
Length = 388
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 187 KHILELPDSKILTLQFDKNSLTMNGTISTLQNSKRTFCRNSIIKLGKT 330
K +LEL D K LTL K+ L M T+ T + + ++ + + G +
Sbjct: 242 KSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAASSGQSDVYENGSS 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,567
Number of Sequences: 28952
Number of extensions: 231386
Number of successful extensions: 604
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -