Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0477
(299 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC) 119 3e-28
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si... 112 4e-26
At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identic... 30 0.25
At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identic... 30 0.25
At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identic... 30 0.25
At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger) fa... 29 0.76
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl... 27 1.8
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 27 3.1
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 27 3.1
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 26 5.4
At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340... 25 7.1
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 25 7.1
At3g12120.1 68416.m01508 omega-6 fatty acid desaturase, endoplas... 25 7.1
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 25 7.1
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 25 9.4
At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein co... 25 9.4
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 25 9.4
>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
Length = 92
Score = 119 bits (287), Expect = 3e-28
Identities = 51/76 (67%), Positives = 60/76 (78%)
Frame = +3
Query: 27 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 206
MAKRTKKVGI GKYGTRYGAS+RK +KKMEV+QH+KY C FCGK +KR VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 207 KRTVAGGAWVFSTTAA 254
+ AGGA+ +T +A
Sbjct: 61 GKVKAGGAYTMNTASA 76
>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
similar to putative 60S ribosomal protein L37a
GB:AAD28753 [Gossypium hirsutum]
Length = 92
Score = 112 bits (270), Expect = 4e-26
Identities = 49/76 (64%), Positives = 57/76 (75%)
Frame = +3
Query: 27 MAKRTKKVGITGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 206
M KRTKK I GKYGTRYGASLRK +KKMEV+QH KY C FCGK ++KR VGIW CK C
Sbjct: 1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60
Query: 207 KRTVAGGAWVFSTTAA 254
+ AGGA+ +T +A
Sbjct: 61 GKVKAGGAYTMNTASA 76
>At2g32770.3 68415.m04011 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 545
Score = 30.3 bits (65), Expect = 0.25
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 11 GEVYQNGQTYQKGWNYW 61
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At2g32770.2 68415.m04012 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 428
Score = 30.3 bits (65), Expect = 0.25
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 11 GEVYQNGQTYQKGWNYW 61
G Y +G+TYQ W+YW
Sbjct: 180 GSCYSSGETYQPRWDYW 196
>At2g32770.1 68415.m04010 purple acid phosphatase (PAP13) identical
to purple acid phosphatase (PAP13) [Arabidopsis
thaliana] GI:20257489; contains Pfam profile PF00149:
Ser/Thr protein phosphatase
Length = 516
Score = 30.3 bits (65), Expect = 0.25
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 11 GEVYQNGQTYQKGWNYW 61
G Y +G+TYQ W+YW
Sbjct: 261 GSCYSSGETYQPRWDYW 277
>At3g06140.1 68416.m00705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 359
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 179 CRHLVL*AMQEDCSRRSLGILHYCCPSCRSAVRRLREVK 295
CRHL M DC++ L + CP CR + L E+K
Sbjct: 317 CRHL---CMCSDCAKE-LRLQSNKCPICRQPIEELLEIK 351
>At4g28730.1 68417.m04109 glutaredoxin family protein contains
glutaredoxin domain, Pfam:PF00462
Length = 174
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 57 TGKYGTRYGASLRKMVKKMEVTQHAKYTCSFC 152
+ +G+R S+RK V + V ++K CS+C
Sbjct: 62 SSSFGSRMEESIRKTVTENTVVIYSKTWCSYC 93
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 232 QAPPATVLLHRLQDQMPTQERF 167
+ PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 232 QAPPATVLLHRLQDQMPTQERF 167
+ PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 209 EDCSRRSLGILHYCCPSCRSA 271
+ C +RSL I H CP C +A
Sbjct: 352 QQCIQRSLEIRHRKCPGCGTA 372
>At5g58930.1 68418.m07382 expressed protein contains Pfam PF05340:
Protein of unknown function (DUF740)
Length = 521
Score = 25.4 bits (53), Expect = 7.1
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +2
Query: 23 QNGQTYQKGWNYW 61
++G+ + KGWN+W
Sbjct: 347 KSGKNWSKGWNFW 359
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 241 ENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 113
E Q P + + ++Q RF+ S+P N F W++S
Sbjct: 177 EQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISS 219
>At3g12120.1 68416.m01508 omega-6 fatty acid desaturase, endoplasmic
reticulum (FAD2) / delta-12 desaturase identical to
omega-6 fatty acid desaturase, endoplasmic reticulum
(FAD2) SP:P46313 [Arabidopsis thaliana (Mouse-ear
cress)] (Plant Cell 6:147-158(1994))
Length = 383
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 189 WSCKRCKRTVAGGAWVFSTTAAHHA 263
W+C+ C T G WV + HHA
Sbjct: 90 WACQGCVLT---GIWVIAHECGHHA 111
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 179 CRHLVL*AMQEDCSRRSLGILHYCCPSCRSAVRRLREVK 295
CRH+ M C++ L CP CR V RL E+K
Sbjct: 334 CRHM---CMCSGCAK-VLRFQTNRCPICRQPVERLLEIK 368
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 66 YGTRYGASLRKMVKKMEVTQH 128
YG R+G+ LR +V E T H
Sbjct: 640 YGRRHGSLLRSIVSDGETTSH 660
>At2g28650.1 68415.m03483 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit
Length = 573
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = -2
Query: 217 TVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSIFLTILRREAP*RVPYLPVIPTFLV 38
+++ H ++D R+I+ P++ C+++S+F T R EA + + + + ++
Sbjct: 27 SLMEHTIEDAESIIHRWIS--PEHVHSSSFCFISSLFSTENREEAKRFIDAVTTLHSGMI 84
Query: 37 RLAILVNLSDTK 2
RL I VN + K
Sbjct: 85 RL-ISVNPTSMK 95
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/21 (66%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 77 TCAIFAS-NSNLFGTFGHFGK 18
T A FAS SN+FGTFG F K
Sbjct: 91 TPAEFASVGSNIFGTFGTFLK 111
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,240,943
Number of Sequences: 28952
Number of extensions: 147923
Number of successful extensions: 440
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -