Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0476
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    84   7e-18

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = +3

Query: 258 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           P LND V+K++PVQKQTRAGQRTRFKAFV I D++GH+GLG+KC+KE
Sbjct: 73  PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKE 119



 Score = 74.1 bits (174), Expect = 7e-15
 Identities = 30/46 (65%), Positives = 40/46 (86%)
 Frame = +1

Query: 124 EDQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIIDFFLAR 261
           +++KEWVPVTKLGRL + GKI  +E IYL+SLPIKE++I+D+FL R
Sbjct: 29  DEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPR 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,923
Number of Sequences: 5004
Number of extensions: 18391
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)