Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0476
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       86   1e-17
07_01_0756 + 5819367-5820038,5820847-5821005                           81   2e-16
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    40   0.001
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     29   1.0  
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143...    26   9.5  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +3

Query: 258 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           P L D V+KI PVQKQTRAGQRTRFKAFV + DNNGH+GLGVKC+KE
Sbjct: 83  PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKE 129



 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 23/41 (56%), Positives = 35/41 (85%)
 Frame = +1

Query: 124 EDQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           +++++WVPVTKLGRL +EG+  K+E IYL SLP+KE +I++
Sbjct: 39  QEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQIVE 79


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 81.4 bits (192), Expect = 2e-16
 Identities = 35/47 (74%), Positives = 40/47 (85%)
 Frame = +3

Query: 258 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           P L D V+KI PVQKQTRAGQRTRFKAFV + D +GH+GLGVKC+KE
Sbjct: 86  PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKE 132



 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +1

Query: 124 EDQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           +++++WVPVTKLGRL +E KI K+E IYL SLP+KE +I++
Sbjct: 42  QEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQIVE 82


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 252 PXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           P    ++ V+++  V K  + G++  F+A V + D  GH+G+GV  +KE
Sbjct: 166 PSDEFSERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKE 214


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 339 FVAIXDNNGHIGLGVKCSK 395
           FV + D + HI LGVKC+K
Sbjct: 2   FVVVGDGDSHIELGVKCAK 20


>04_03_0517 +
           16712487-16712570,16713715-16714059,16714149-16714301,
           16714889-16714972,16715426-16715479,16715552-16715647,
           16716163-16716258,16716941-16717086,16717650-16717799,
           16717889-16718018,16718128-16718787,16718881-16718979,
           16719058-16719210,16719323-16720054,16720338-16720640
          Length = 1094

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 172 REGKIDKLESIYLFSLPIKEF 234
           REGKI +LES+   +LP +EF
Sbjct: 717 REGKIARLESLMDGTLPTEEF 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,752,032
Number of Sequences: 37544
Number of extensions: 121359
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)