Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0476
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   2e-18
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   1.1  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.1  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   1.1  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   1.1  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   1.1  
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 29   1.8  
SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)                 28   3.2  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 45/71 (63%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
 Frame = +3

Query: 189 QTREHLLVF-FTNQRIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNG 365
           +T EH+ +F    +      F    +L D VLKIMPVQKQTRAGQRTRFKAFVAI D+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 366 HIGLGVKCSKE 398
           H+GLGVKCSKE
Sbjct: 84  HVGLGVKCSKE 94



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 32/39 (82%), Positives = 34/39 (87%)
 Frame = +1

Query: 139 WVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIIDFFL 255
           WVPVTKLGRL ++ KI  LE IYLFSLPIKEFEIIDFFL
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLFSLPIKEFEIIDFFL 46


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267  NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
            N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 267 NDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLG 380
           N  +LK++ +  Q +A  +  F+ FVA   +  H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569


>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 317 TAHTFQGICCHXRQQRSYW 373
           TA  +  ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504


>SB_47521| Best HMM Match : RVT_1 (HMM E-Value=7.2e-24)
          Length = 338

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 326 CALSGTCLFLYRHDLKNXIIQGRARKKSMISNSL 225
           C LS T   LY HDL + + + + +++ ++ NS+
Sbjct: 111 CVLSTTLFNLYLHDLSDSLRELQPQREGLVINSI 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,188,828
Number of Sequences: 59808
Number of extensions: 144431
Number of successful extensions: 361
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)