Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0476
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    80   7e-16
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.30 
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    31   0.30 
U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    26   8.7  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 79.8 bits (188), Expect = 7e-16
 Identities = 37/46 (80%), Positives = 40/46 (86%)
 Frame = +3

Query: 261 SLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           +L D VLKI PVQKQT AGQRTRFKAFVAI D+ GH+GLGVKCSKE
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKE 142



 Score = 63.3 bits (147), Expect = 6e-11
 Identities = 30/41 (73%), Positives = 32/41 (78%)
 Frame = +1

Query: 124 EDQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           E + EW PVTKLGRL +E KI  LE IYL SLPIKEFEIID
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIID 92


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 344 NKCLETCALSGTCLFLYR-HDLKNXIIQGRARKKSMISNSLIGKEN 210
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 344 NKCLETCALSGTCLFLYR-HDLKNXIIQGRARKKSMISNSLIGKEN 210
           ++CLE C +S  C F Y+  D+ N +I  R     M++  +    N
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRRRMALPMLAQKICADVN 331


>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +3

Query: 174 RRKNRQTREHLLVFFTNQRIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFK-AFVAI 350
           R++ R T ++  +  T +RIR   F    S    +L  +PV+K+    +  RF  A+++ 
Sbjct: 24  RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83

Query: 351 XDN 359
            DN
Sbjct: 84  LDN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,688,477
Number of Sequences: 27780
Number of extensions: 108202
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)