Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0476
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...    89   1e-18
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...    89   1e-18
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...    89   1e-18
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative            89   1e-18
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...    89   1e-18
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)              87   3e-18
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    35   0.017

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 39/50 (78%), Positives = 44/50 (88%)
 Frame = +3

Query: 249 LPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           L  PSL D V+KIMPVQKQTRAGQRTRFKAF+ + D+NGH+GLGVKCSKE
Sbjct: 82  LVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKE 131



 Score = 66.5 bits (155), Expect = 6e-12
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIIDFFL 255
           ++++WVPVTKLGRL +EGKI K+E IYL SLP+KE++IID  +
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLV 83


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = +3

Query: 228 RIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           +I DH  L  P+L D V+KIMPVQKQTRAGQRTRFKAFV + D NGH+GLGVKCSKE
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           ++ +WVPVTKLGRL  + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = +3

Query: 228 RIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           +I DH  L  P+L D V+KIMPVQKQTRAGQRTRFKAFV + D NGH+GLGVKCSKE
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           ++ +WVPVTKLGRL  + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = +3

Query: 228 RIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           +I DH  L  P+L D V+KIMPVQKQTRAGQRTRFKAFV + D NGH+GLGVKCSKE
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           ++ +WVPVTKLGRL  + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/57 (73%), Positives = 47/57 (82%)
 Frame = +3

Query: 228 RIRDH*FLPXPSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           +I DH  L  P+L D V+KIMPVQKQTRAGQRTRFKAFV + D NGH+GLGVKCSKE
Sbjct: 85  QIIDH--LVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 139



 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIID 246
           ++ +WVPVTKLGRL  + KI KLE IYL SLP+KE++IID
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIID 88


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 38/47 (80%), Positives = 42/47 (89%)
 Frame = +3

Query: 258 PSLNDXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           P+L D V+KIMPVQKQTRAGQRTRFKAFV + D NGH+GLGVKCSKE
Sbjct: 94  PTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKE 140



 Score = 59.3 bits (137), Expect = 9e-10
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = +1

Query: 127 DQKEWVPVTKLGRLXREGKIDKLESIYLFSLPIKEFEIIDFFL 255
           ++++WVPVTKLGRL   G I ++E IYL SLP+KE++IID  +
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLI 92


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +3

Query: 270 DXVLKIMPVQKQTRAGQRTRFKAFVAIXDNNGHIGLGVKCSKE 398
           + V+++  V K  + G++ +F+A V + D  G++G+G   +KE
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKE 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,253,909
Number of Sequences: 28952
Number of extensions: 99744
Number of successful extensions: 210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)