Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0474
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   6.8  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   9.0  

>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 469 NRIDDLRXIHLKNHA*PPS*NRRSXIGWAKFSYSTKIAED 588
           N  DD R + ++N   PPS +RR       F      +ED
Sbjct: 497 NSFDDARKLDIQNERLPPSNSRRRSTDLKAFEEVMNSSED 536


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 503 KTTLNRHLKIVGASSAGQNLAIQQRLLKISSTSKFNIHT 619
           KT    ++KIVG S+  + L +   + ++ +  K  +HT
Sbjct: 149 KTECGSYVKIVGNSNPREWLFLSDNINELKAARKVGLHT 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,669
Number of Sequences: 5004
Number of extensions: 31587
Number of successful extensions: 60
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)