Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0474
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777...    28   7.0  
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875           28   7.0  
11_06_0410 - 23223701-23223714,23223863-23225159,23225314-232262...    27   9.2  

>10_08_0457 +
           18076911-18077272,18077356-18077475,18077554-18077782,
           18077993-18078652,18079224-18079425,18079521-18079611,
           18079780-18079837
          Length = 573

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 420 QSTLIHNATYGPSPVKQSDRRPAXNTFEKPRLTA 521
           Q TL+H+     +P  Q+ RRP     EK   T+
Sbjct: 363 QGTLLHSPLMAETPAMQTPRRPLPTQIEKLETTS 396


>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
          Length = 356

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 127 SSCSTCKW*CTESRGRSMGRSKNRR 201
           +SC  CK  C  S GRS  R++ RR
Sbjct: 252 TSCIFCKSFCRSSGGRSRARARERR 276


>11_06_0410 -
           23223701-23223714,23223863-23225159,23225314-23226225,
           23226952-23227023,23227323-23227471,23227879-23227912
          Length = 825

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 375 SLFCHL*INKSKLIIQ--STLIHNATYGPS 458
           +LFCH  I KSKL  Q  S    N+T GPS
Sbjct: 758 ALFCHCGIEKSKLWQQQKSANFRNSTPGPS 787


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,339
Number of Sequences: 37544
Number of extensions: 178986
Number of successful extensions: 394
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)