Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0472
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   6.0  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   7.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 576 HPLDSLPYPILF 541
           HPL+S+P+P ++
Sbjct: 105 HPLESVPFPQVY 116


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 356 YY*RRLWDRSQIRLLLKLCLXDRFKTXINKNIMADIASL*VLLQMNVV 499
           Y  RR W  S +  +L L +       IN+NI        ++L +  V
Sbjct: 614 YNQRRRWMPSTMANILDLLMDYEHTVKINENISMPYIGYQIILMIGTV 661


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 469 AVGTTADECCEKXRDFRRTXIRALKKD 549
           A+ T   +C EK R      I+ LKK+
Sbjct: 67  ALQTNCAKCTEKQRTAAYRSIKRLKKE 93


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 316 YKNMIANHXKKFV 354
           +KN++ NH ++FV
Sbjct: 396 FKNLLENHYEEFV 408


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,196
Number of Sequences: 336
Number of extensions: 2000
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)