Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0472
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    27   2.1  
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    27   2.1  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.7  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.4  

>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 7/29 (24%), Positives = 20/29 (68%)
 Frame = +2

Query: 125 KMXXNNPPNQNYWVVLREDXSNVILSTHN 211
           ++  +NPPN+N + +L  + ++++ + H+
Sbjct: 85  RLDSDNPPNENDFAILETELTDIMATVHD 113


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 292 WINCLFSPVSTTYLSLESGNWGIWINKIMGTKYHIAXI-FSKYNP 161
           W+  L    +  +  +E G + +W+  + G KY I  I FS  NP
Sbjct: 134 WVCNLKKEDAIPFALVEQG-YDVWLGNLRGNKYSIKNIKFSSQNP 177


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 335 LAIMFLYDYRRFIYVDKLSIFSCFYY 258
           L + F Y Y +F++V + S  S +YY
Sbjct: 205 LKLFFRYQYSQFLFVYRESFLSDYYY 230


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 116 FSVKMXXNNPPNQNYWVVLREDXSNVILSTHNFVN 220
           F V     N P+  YW+ L    S ++ ++ N+++
Sbjct: 115 FEVWAFMANDPSMKYWLKLTNQLSGLLCASLNYID 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,392
Number of Sequences: 5004
Number of extensions: 34128
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)