Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0472
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family ...    30   1.1  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AC024859-21|AAK29962.4|  490|Caenorhabditis elegans Twik family of
           potassium channelsprotein 45, isoform a protein.
          Length = 490

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = -1

Query: 391 YLASIPKTSLVVLQTFSXGWLSCSCTIIGGSFMWINCLFSPVSTTYLSLESGNWGIWINK 212
           Y +S    S+ +  T   G ++C  T  G +   ++ +++ +    + L  G+ G+W  K
Sbjct: 151 YFSSATFYSMTLFSTIGYGTITCQ-TFWGKT---VSMVYASIGLPIMLLVLGDIGVWFQK 206

Query: 211 IMGTKYHIAXIFSKYN 164
           +M   Y    +  KYN
Sbjct: 207 VMTNAY--IFVMLKYN 220


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 313 IIGGSFMWINCLFSPVSTTYL 251
           +IGG F+++NCLF  ++  YL
Sbjct: 205 VIGGVFLFVNCLFLVLTYCYL 225


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 229  GIWINKIMGTKYHIAXIF 176
            G W N +MG KYHI+ ++
Sbjct: 1237 GYWKNHLMGRKYHISALY 1254


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 229  GIWINKIMGTKYHIAXIF 176
            G W N +MG KYHI+ ++
Sbjct: 1237 GYWKNHLMGRKYHISALY 1254


>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 310 IGGSFMWINCLFSPVSTTYL 251
           IGGSF+++NCL+  ++  YL
Sbjct: 191 IGGSFLFLNCLYLIIAYFYL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,598
Number of Sequences: 27780
Number of extensions: 186086
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)