Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0470
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.54 
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    28   0.95 
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    27   2.2  
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    26   3.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.7  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 219 QVDIDSNGIRLLDKYSFLCEMYDEDADEIKDLTLNYFPFDNSVQ 350
           ++ I+   ++ ++  S++ E YD    EI++L      FD SV+
Sbjct: 838 KISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVE 881


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +3

Query: 426 IGNIVNIFSKLLYIKD-----CAPATRKTLSKIASTF 521
           I +  N+ SKLLY+KD      APA  + +SK+ + F
Sbjct: 6   ISSSKNVVSKLLYVKDEYWPSVAPAATELISKLINAF 42


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 520 NVLAIFESVFRVAGAQSLIYNNFENILTILPICNIS 413
           ++L +FES      A+ L+Y + EN  T +P C ++
Sbjct: 88  DILPLFESAVTTV-AKRLLYRSQENASTNIPTCQVT 122


>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 472 SLIYNNFENILTILPICNISKFNGGS 395
           SL Y    NILT  PI   +K  GGS
Sbjct: 19  SLAYKKASNILTFPPIRTSTKHGGGS 44


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 330 PFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIG-NIVNIFSKLLY 464
           PF ++   ID       L  V   P+N+DM  +G   V+IF   LY
Sbjct: 838 PFFSNKLFIDQDFILGFLDLVASEPINVDMTDVGTQFVHIFHASLY 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,897
Number of Sequences: 5004
Number of extensions: 42796
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)