Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0468
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.0  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.3  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   5.4  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.4  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   9.4  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 539 IIITSLCFSALVFIYGKT--LGADIDSPGSK*PSNICWLILYFLAKLKCLQSSCVIGKVI 366
           II+T++ F A +  +GKT  L ADI  P      ++  L+ + LA L  + SS +   V 
Sbjct: 488 IIVTTVAFGAFIIFHGKTQALTADIVFPA----VSLFNLLQFPLAMLPTVISSLLEASVS 543

Query: 365 RGRLY 351
             R+Y
Sbjct: 544 VSRIY 548


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 375 KGYK-GTSIRVQIQRPLW--QLKVFPDVLLVEQLEIILSCGPSYAG 247
           K YK   S++V    PL     + FP  L+  Q+ II S GPSY+G
Sbjct: 561 KSYKTNDSLKVPPLVPLLIGTTRFFPVPLVSSQIAIISSLGPSYSG 606


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 289 LDE--EYIRKNFKLPQRALYLDPYRRPLITFP--MTQEDCKHFNLARKYKINQQILDGYL 456
           LDE   Y+ KNF+  +RAL  +P     +T+P  +     K +      K  +Q+L  YL
Sbjct: 652 LDEAKRYMSKNFQPDKRALLFNPRTANDMTYPPSLFSSLIKEYTSLGDIKEAKQVLSTYL 711

Query: 457 D 459
           +
Sbjct: 712 E 712


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -2

Query: 419  FLAKLKCLQSSCVIGKVIRGRLYGSKYNALCGNLKFFLMYSSSSNWKSF 273
            F+  + CL S     + +R  L+GS +   CG L      +  + WK +
Sbjct: 1663 FVDTMPCLLSKLEFDEELRIELFGSFWKEYCGELNI----NDPNTWKEY 1707


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 648 ISYKNAQMNPWRSDGLTMPKDICIH 574
           ++YKN     W   G T PK+  +H
Sbjct: 601 LAYKNPNATTWEMAGYTWPKNSLMH 625


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 358 VYTGPNTTPSVAT*SFS*CTPRRATGNHFEL 266
           V  GP++TP+++  S S   P+   G HF L
Sbjct: 452 VVVGPDSTPTLSFTSGSEGIPKGVKGRHFSL 482


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 340 YLDPYRRPLITFPMTQEDCKHFNLARKYKINQQI---LDGYLDPGESI 474
           Y  P   P +   +   D +H  L R  +  + +   L G+L+PGES+
Sbjct: 220 YQYPRTDPCVIMVILSHDMQHILLGRALRHPKGLYACLAGFLEPGESL 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,550
Number of Sequences: 5004
Number of extensions: 57822
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)