Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0468
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.3  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   5.7  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_46218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 431 LILYFLAKLKCLQSSCVIGKVIRGRLYGSKYNA 333
           LIL    +L+ L   CVI  V+RG L G  YNA
Sbjct: 528 LILQPACRLQDLDIQCVIEDVLRGNLRGINYNA 560


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 137  TSCCTCEGHHSGAKSSLPLVC 199
            T  C C G+++GA  S+PL C
Sbjct: 4307 TFLCVCVGNYTGALCSIPLAC 4327


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 117 ESPKNTLKVFKLFCLCFYHFFVCFNLFKFC 28
           ++ K    V  +F LC++ FFV F  F++C
Sbjct: 286 KATKTLAVVVGVFILCWFPFFVIFVTFQYC 315


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 143 CCTCEG-HHSGAKSSLPLVCLVPRDGASSEARTKP 244
           C  C G HH+  K + P  C V  DG ++ A  +P
Sbjct: 663 CRQCLGLHHNSRKKTEPANCTVSGDGLTTGAANQP 697


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,709
Number of Sequences: 59808
Number of extensions: 452067
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)