Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0468
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24440.1 68416.m03067 fibronectin type III domain-containing ...    30   1.2  
At4g00955.1 68417.m00129 expressed protein                             29   2.7  
At1g72140.1 68414.m08341 proton-dependent oligopeptide transport...    28   4.7  
At4g37550.1 68417.m05314 formamidase, putative / formamide amido...    28   6.1  
At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger) fa...    27   8.1  
At4g30200.3 68417.m04295 expressed protein contains weak similar...    27   8.1  
At4g30200.2 68417.m04294 expressed protein contains weak similar...    27   8.1  
At4g30200.1 68417.m04293 expressed protein contains weak similar...    27   8.1  
At3g46120.1 68416.m04991 calcineurin-like phosphoesterase family...    27   8.1  
At3g05690.1 68416.m00636 CCAAT-binding transcription factor (CBF...    27   8.1  
At2g26390.1 68415.m03167 serpin, putative / serine protease inhi...    27   8.1  

>At3g24440.1 68416.m03067 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 602

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
           FCK  SCC C         SL LVC
Sbjct: 64  FCKRCSCCVCHNFDENKDPSLWLVC 88


>At4g00955.1 68417.m00129 expressed protein
          Length = 252

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/58 (36%), Positives = 29/58 (50%)
 Frame = +1

Query: 427 INQQILDGYLDPGESISAPSVFPYMKTRAEKQSEVMMMKK*YTYYSFLIMYTNVLWHS 600
           INQ+ LD  L   ES    S FP     + K SE + MK+  T  S  ++YT++   S
Sbjct: 129 INQRFLDKQLKSCESTGNISCFP--SDTSSKSSEFLSMKE-LTNSSCRLLYTSIALES 183


>At1g72140.1 68414.m08341 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 542 FIIITSLCFSALVFIYGKTLGAD---IDSPGSK*PSNICWLILYFL 414
           F+ I S+  +ALV +       D   +DSP +  P ++CWLI  ++
Sbjct: 406 FLSIISMVIAALVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYI 451


>At4g37550.1 68417.m05314 formamidase, putative / formamide
           amidohydrolase, putative similar to SP|Q50228
           Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
           {Methylophilus methylotrophus}; contains Pfam profile
           PF03069: Acetamidase/Formamidase family
          Length = 452

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +2

Query: 134 MTSCCTCEGHHSGAKSSLPLVC--LVPRDGASSEARTKPRPA*LGPQL 271
           + SCC CEG  SG   S   V    +P      + R K R   +GP++
Sbjct: 380 LLSCCPCEGRLSGIVDSPNAVATLAIPTAIFDQDIRPKNRKVPVGPRV 427


>At5g46650.1 68418.m05748 zinc finger (C3HC4-type RING finger)
           family protein contains similarity to RING-H2 zinc
           finger protein ATL6 [Arabidopsis thaliana] GI:4928403;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 289

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 462 RXINICAERFPIYENEGRKAKRSDDDEEIIYILQLPDYVYKCPLA*SNHQNATGS 626
           R I    ++F   +  G    R+  +EE  Y L+LPD+V K  +   ++ N T S
Sbjct: 207 RKIETLPDKFSRSKTTGHSIVRNKPEEEDRYTLRLPDHV-KIKVTRRHNNNQTES 260


>At4g30200.3 68417.m04295 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 702

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
           FC+  SCC C  +      SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185


>At4g30200.2 68417.m04294 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 714

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
           FC+  SCC C  +      SL L C
Sbjct: 161 FCRRCSCCICRKYDDNKDPSLWLTC 185


>At4g30200.1 68417.m04293 expressed protein contains weak
           similarities to Pfam profiles: PF00041 Fibronectin type
           III domain, PF00628 PHD-finger; supporting cDNA
           gi|11177136|dbj|AB050977.1|
          Length = 685

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 125 FCKMTSCCTCEGHHSGAKSSLPLVC 199
           FC+  SCC C  +      SL L C
Sbjct: 144 FCRRCSCCICRKYDDNKDPSLWLTC 168


>At3g46120.1 68416.m04991 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 388

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -1

Query: 408 VEMLTVFLCHRKGYKGTSIRVQIQRPLWQLKVFPDVLLVEQLEIILSCGPSYAGRGFVLA 229
           + +L++F+  + G   T +RV        L+ FP        E +      +AGRG +++
Sbjct: 13  IALLSIFVVSQAGVTSTHVRVSEPSEEMPLETFPPPACYNAPEQVHITQGDHAGRGMIIS 72


>At3g05690.1 68416.m00636 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
           subunit B
          Length = 295

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 181 ESAAGLPGSSRWSIFGSQDKAPACIAG 261
           E     P +S W+ FGSQ  AP  +AG
Sbjct: 8   EGLFSAPQTSWWTAFGSQPLAPESLAG 34


>At2g26390.1 68415.m03167 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 389

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 265 TTQNDFQLLDEEYIRKNFKLPQRALYLDPYRR-PLITFPMTQEDCKHFNL 411
           T  NDF LLD   ++  F +  +  YL  Y    ++  P   ED +HF++
Sbjct: 188 TKDNDFHLLDGNTVKVPFMMSYKDQYLRGYDGFQVLRLPYV-EDKRHFSM 236


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,443
Number of Sequences: 28952
Number of extensions: 307574
Number of successful extensions: 791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)